View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8573_high_7 (Length: 240)
Name: NF8573_high_7
Description: NF8573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8573_high_7 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 27 - 240
Target Start/End: Complemental strand, 30503119 - 30502906
Alignment:
| Q |
27 |
tatttgtttacacaatcaaaccttcctttgatttgttcccttttcccattacccctaagactcaacttgatcataattgggatttaattattgaaacttg |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30503119 |
tatttgtttacacaatcaaaccttcctttgatttgttcccttttcccattacccctaagactaaacttgatcataattgggatttaattattgaaacttg |
30503020 |
T |
|
| Q |
127 |
catttatgaccagataatttataatagtcttttgtatgtcagttaatttgtttttactcaaattactactcaagtttaatacactgaagggtattgtatg |
226 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30503019 |
aatttatgaccagataatggataatagtcttttgtatgtcagttaatttgtttttactcaaattactactcaagtttaatacactaaagggtattgtatg |
30502920 |
T |
|
| Q |
227 |
tactaaacattgtt |
240 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
30502919 |
tactaaacattgtt |
30502906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 30512702 - 30512651
Alignment:
| Q |
154 |
tcttttgtatgtcagttaatttgtttttactcaaattactactcaagtttaa |
205 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||| || ||| |||||| |
|
|
| T |
30512702 |
tcttttgtttgtcagttaatttgtttttactcaatttattagtcatgtttaa |
30512651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 24707130 - 24707207
Alignment:
| Q |
128 |
atttatgaccagataatttataatagtcttttgtatgtcagttaatttgtttttactcaaattactactcaagtttaa |
205 |
Q |
| |
|
||||||||||||||||| |||| ||||||| ||| || ||||||||||||||| |||||| || |||||||||| |
|
|
| T |
24707130 |
atttatgaccagataatgaataactatcttttgattgttagctaatttgtttttacttaaattaatagtcaagtttaa |
24707207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University