View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8573_low_1 (Length: 722)
Name: NF8573_low_1
Description: NF8573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8573_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 18 - 712
Target Start/End: Complemental strand, 14984861 - 14984182
Alignment:
| Q |
18 |
cattacagttcagccactctaggatccagcagtttagatcaacattcacagagggttgtatgcctaaaggtgaggcaaataaggacaaacgtgctagatt |
117 |
Q |
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| T |
14984861 |
cattacagttcagccactctaggatccagcagtttagatcaacattcacagggggttgtatgcctaaaggtgaggcaaataaggacaaacatgctagatt |
14984762 |
T |
|
| Q |
118 |
acaattcatatacagatggctcacattttctatggatgagtggcagagagggcatacagtgtctaaatgaataccnnnnnnnnggagatttgctctagtg |
217 |
Q |
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| T |
14984761 |
acaattcatatacagatggctcacattttctatggatgagtggcagagagggcatacagtgtctaaatgaataccttttttttggagatttgctctagtg |
14984662 |
T |
|
| Q |
218 |
ggcagaatgtttttagcaagtctccacataaaagttttgatcttgtttgggataggagccttccaaacatcattccataatttaccatctctgtcggttg |
317 |
Q |
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| T |
14984661 |
ggcagaatgtttttagcaagtctccacataaaagttttgatcttgtttgggataggagccttccaaatatcattccataatttaccatccctgtcggttg |
14984562 |
T |
|
| Q |
318 |
atggacctggacagaggnnnnnnnngttggtgcacaagagatggtatgctgaacgtactgatatgggaatgctgacaatctttaaagcttctgcactgtc |
417 |
Q |
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| T |
14984561 |
atggacctggacggaggttttctttgttggtgcacaagagatggtatgctgaacgtactgatatgggaatgctgacaatctttaaagcttctgcactgtc |
14984462 |
T |
|
| Q |
418 |
aaaatcgtttttccatgttcttactgtacttttttaataccttttatttatttgtcatccggttcaacta---ttgaaccccaattttaccatgaccgga |
514 |
Q |
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| T |
14984461 |
aaaatcgtttttccatgttcttactgtacttttttaataccttttatttatttgtcatccggttcaactatagttgaaccccaattttaccatgaccgga |
14984362 |
T |
|
| Q |
515 |
agtctcgcaggtttgatattctgtctggttttcaaaacctgtctggttttcaaaacattgcaaaatataaaggattgattgcagagattcaaattgctgt |
614 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14984361 |
agtctcgcaggtttgatattctgtctggt------------------tttcaaaacattgcaaaatataaaggattgattgcagagattcaaattgctgt |
14984280 |
T |
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| Q |
615 |
tcacagctgagtcatttctcttttacctagacattggacttttatacgtggtttaagggaaagtggtccttttgaatttctgataatttaggtctctg |
712 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14984279 |
tcacagctgagtcatttctcttttacctagacattggacttttatacgtggtttgagggaaagtggtccttttgaatttctgataatttaggtctctg |
14984182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 270
Target Start/End: Original strand, 24553445 - 24553514
Alignment:
| Q |
201 |
ggagatttgctctagtgggcagaatgtttttagcaagtctccacataaaagttttgatcttgtttgggat |
270 |
Q |
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||||||||| ||||||||||| ||| || |||||||| |||||||| || ||||||| ||||||||||| |
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| T |
24553445 |
ggagatttgatctagtgggcaaaatattcttagcaagcctccacatgaagtttttgattttgtttgggat |
24553514 |
T |
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