View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8573_low_10 (Length: 245)
Name: NF8573_low_10
Description: NF8573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8573_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 32801801 - 32801574
Alignment:
| Q |
1 |
tcctatgttattaattatacgtgacaaacatttaaaaaataaactatagggttatcaaaattcacctccttcacaactcgcaagaatttacctttcaaag |
100 |
Q |
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| T |
32801801 |
tcctatgttattaattatacgtgacaaacatttaaaaaataaactatagggttatcaaaattcacctccttcacaactcgcaagaatttacctttcaaag |
32801702 |
T |
|
| Q |
101 |
tacatatattttgtaactaatnnnnnnnnnnnnntgtacacacacctactttgatatttgttaaggatattaaggtcatataagaatatagacaacgaca |
200 |
Q |
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||||||||||||||||||||| || ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32801701 |
tacatatattttgtaactaataaaaaataaaaaatgcacacacatccactttgatatttgttaaggatattaaggtcatataagaatatagacaacgaca |
32801602 |
T |
|
| Q |
201 |
atggccaaaatggaattaaagtttattgt |
229 |
Q |
| |
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|||||| |||||||||||||||||||||| |
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| T |
32801601 |
atggcc-aaatggaattaaagtttattgt |
32801574 |
T |
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