View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8573_low_11 (Length: 240)
Name: NF8573_low_11
Description: NF8573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8573_low_11 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 27 - 240
Target Start/End: Complemental strand, 30503119 - 30502906
Alignment:
| Q |
27 |
tatttgtttacacaatcaaaccttcctttgatttgttcccttttcccattacccctaagactcaacttgatcataattgggatttaattattgaaacttg |
126 |
Q |
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| T |
30503119 |
tatttgtttacacaatcaaaccttcctttgatttgttcccttttcccattacccctaagactaaacttgatcataattgggatttaattattgaaacttg |
30503020 |
T |
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| Q |
127 |
catttatgaccagataatttataatagtcttttgtatgtcagttaatttgtttttactcaaattactactcaagtttaatacactgaagggtattgtatg |
226 |
Q |
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| T |
30503019 |
aatttatgaccagataatggataatagtcttttgtatgtcagttaatttgtttttactcaaattactactcaagtttaatacactaaagggtattgtatg |
30502920 |
T |
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| Q |
227 |
tactaaacattgtt |
240 |
Q |
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| T |
30502919 |
tactaaacattgtt |
30502906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 30512702 - 30512651
Alignment:
| Q |
154 |
tcttttgtatgtcagttaatttgtttttactcaaattactactcaagtttaa |
205 |
Q |
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| T |
30512702 |
tcttttgtttgtcagttaatttgtttttactcaatttattagtcatgtttaa |
30512651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 24707130 - 24707207
Alignment:
| Q |
128 |
atttatgaccagataatttataatagtcttttgtatgtcagttaatttgtttttactcaaattactactcaagtttaa |
205 |
Q |
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| T |
24707130 |
atttatgaccagataatgaataactatcttttgattgttagctaatttgtttttacttaaattaatagtcaagtttaa |
24707207 |
T |
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