View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8573_low_13 (Length: 238)

Name: NF8573_low_13
Description: NF8573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8573_low_13
NF8573_low_13
[»] chr7 (3 HSPs)
chr7 (33-95)||(26154339-26154401)
chr7 (94-150)||(25075021-25075077)
chr7 (96-164)||(26154425-26154491)
[»] chr4 (2 HSPs)
chr4 (96-150)||(43138668-43138722)
chr4 (96-133)||(1605294-1605331)
[»] chr3 (1 HSPs)
chr3 (96-168)||(30259817-30259889)
[»] chr8 (1 HSPs)
chr8 (96-164)||(5155442-5155510)
[»] chr2 (1 HSPs)
chr2 (96-168)||(4865634-4865706)


Alignment Details
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 26154339 - 26154401
Alignment:
Q  33 aatcattaatgacttggttaatttcattcaatgctattctgctcctatatcagtacccaacat 95  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||    
T  26154339 aatcattaatgacttggttaatgtcattcaatgctattctgctcctatatctgtagccaacat 26154401  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 25075021 - 25075077
Alignment:
Q  94 atttaagtcacgttgaatttaatacctgcgtgacttaagtaatgttgaaggtatttt 150  Q
    ||||||||||||||| |||||| | |||||||||||||||  ||| |||||||||||    
T  25075021 atttaagtcacgttggatttaacatctgcgtgacttaagttgtgtggaaggtatttt 25075077  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 26154425 - 26154491
Alignment:
Q  96 ttaagtcacgttgaatttaatacctgcgtgacttaagtaatgttgaaggtatttttatcggtttgtatg 164  Q
    ||||||||| |||| | ||| ||||||||||||||||| |  |||| ||||||||||||||||| ||||    
T  26154425 ttaagtcacattgagtctaacacctgcgtgacttaagtca--ttgagggtatttttatcggtttctatg 26154491  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 43138668 - 43138722
Alignment:
Q  96 ttaagtcacgttgaatttaatacctgcgtgacttaagtaatgttgaaggtatttt 150  Q
    ||||||||||||| |||||| || |||||||||||||| ||| ||||||||||||    
T  43138668 ttaagtcacgttgcatttaacacttgcgtgacttaagtcatgctgaaggtatttt 43138722  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 1605331 - 1605294
Alignment:
Q  96 ttaagtcacgttgaatttaatacctgcgtgacttaagt 133  Q
    |||||||||||||||||||| |||||||||||||||||    
T  1605331 ttaagtcacgttgaatttaacacctgcgtgacttaagt 1605294  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 30259817 - 30259889
Alignment:
Q  96 ttaagtcacgttgaatttaatacctgcgtgacttaagtaatgttgaaggtatttttatcggtttgtatgggag 168  Q
    |||||||||||||  ||||| ||||||||||| ||||| |||| |  |||||||| ||| |||||||||||||    
T  30259817 ttaagtcacgttgggtttaacacctgcgtgacataagtcatgtggtgggtattttgatcagtttgtatgggag 30259889  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 5155442 - 5155510
Alignment:
Q  96 ttaagtcacgttgaatttaatacctgcgtgacttaagtaatgttgaaggtatttttatcggtttgtatg 164  Q
    ||||||||||||| || ||| ||||||||||||||||  | || |||||||||||  || |||||||||    
T  5155442 ttaagtcacgttggatataacacctgcgtgacttaagacacgtggaaggtattttcgtcagtttgtatg 5155510  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 4865634 - 4865706
Alignment:
Q  96 ttaagtcacgttgaatttaatacctgcgtgacttaagtaatgttgaaggtatttttatcggtttgtatgggag 168  Q
    ||||||||||||| |||||| ||||| || |||||||| |||| |  ||||||||  || |||||||||||||    
T  4865634 ttaagtcacgttggatttaacacctgtgtaacttaagtcatgtgggtggtattttggtcagtttgtatgggag 4865706  T

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