View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8573_low_14 (Length: 229)
Name: NF8573_low_14
Description: NF8573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8573_low_14 |
 | |
|
| [»] chr6 (4 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 30502765 - 30502537
Alignment:
| Q |
1 |
ctaggcatacacatgcaaagagccatgttcattctcatgattgttgcgattcctctcgctattatttgggcaaacactagatccattctcattttccttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30502765 |
ctaggcatacacatgcaaagagccatgttcattctcatgattgttgcgattcctctcgctattatttgggcaaacactagatccattctcattttccttg |
30502666 |
T |
|
| Q |
101 |
gacaagatcacgaaatatctacggaggctggcaactatgctaagttaatggttccatccctttttgcttatggtctcctacaatgcctcaacagattctt |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30502665 |
gacaagatcacgaaatatctatggaggctggcaactatgctaagttaatggttccatccctttttgcttatggtctcctacaatgcctcaacagattctt |
30502566 |
T |
|
| Q |
201 |
acaaactcaaaatattgtatttccaatga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
30502565 |
acaaactcaaaatattgtatttccaatga |
30502537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 30484952 - 30484725
Alignment:
| Q |
2 |
taggcatacacatgcaaagagccatgttcattctcatgattgttgcgattcctctcgctattatttgggcaaacactagatccattctcattttccttgg |
101 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| || || ||||| ||||| ||||| ||||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
30484952 |
taggcatacacatgcaaagagcaatgttcattctcatgatcgtcgccattcccctcgcgattatctgggcaaacacaagatccattctgattttacttgg |
30484853 |
T |
|
| Q |
102 |
acaagatcacgaaatatctacggaggctggcaactatgctaagttaatggttccatccctttttgcttatggtctcctacaatgcctcaacagattctta |
201 |
Q |
| |
|
||||||| ||||||||||| || ||||| | ||||||||||||||||||||| | |||||||||||| ||||| |||||||| ||||||||||||||| |
|
|
| T |
30484852 |
ccaagatcttgaaatatctactgaagctggaagctatgctaagttaatggttccctgcctttttgcttacggtcttctacaatgtctcaacagattctta |
30484753 |
T |
|
| Q |
202 |
caaactcaaaatattgtatttccaatga |
229 |
Q |
| |
|
|| ||||||||||||||||||||||||| |
|
|
| T |
30484752 |
cagactcaaaatattgtatttccaatga |
30484725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 30512411 - 30512184
Alignment:
| Q |
2 |
taggcatacacatgcaaagagccatgttcattctcatgattgttgcgattcctctcgctattatttgggcaaacactagatccattctcattttccttgg |
101 |
Q |
| |
|
||||| |||||||||| ||||| ||||||||||||||| | ||||||||||| ||||| |||||||||||||||| ||||| |||||| || | ||||| |
|
|
| T |
30512411 |
taggcgtacacatgcagagagcaatgttcattctcatggtcgttgcgattcccctcgcggttatttgggcaaacacaagatcaattctccttgtgcttgg |
30512312 |
T |
|
| Q |
102 |
acaagatcacgaaatatctacggaggctggcaactatgctaagttaatggttccatccctttttgcttatggtctcctacaatgcctcaacagattctta |
201 |
Q |
| |
|
||||||| |||||||||| |||||||||| |||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30512311 |
ccaagatcctgaaatatctatagaggctggcagctatgcaaagttaatggttccatgcctttttgcttatggtcttctacaatgcctcaacagattctta |
30512212 |
T |
|
| Q |
202 |
caaactcaaaatattgtatttccaatga |
229 |
Q |
| |
|
|| ||||||||||||||||||||||||| |
|
|
| T |
30512211 |
cagactcaaaatattgtatttccaatga |
30512184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 24707374 - 24707601
Alignment:
| Q |
2 |
taggcatacacatgcaaagagccatgttcattctcatgattgttgcgattcctctcgctattatttgggcaaacactagatccattctcattttccttgg |
101 |
Q |
| |
|
||||| |||||||||| ||||| ||||||||||| ||||| ||||||||||| ||||| |||||||||||||||| | ||| ||||| ||||| ||||| |
|
|
| T |
24707374 |
taggcgtacacatgcagagagcaatgttcattcttatgatcgttgcgattcccctcgcggttatttgggcaaacacaaaatctattcttattttacttgg |
24707473 |
T |
|
| Q |
102 |
acaagatcacgaaatatctacggaggctggcaactatgctaagttaatggttccatccctttttgcttatggtctcctacaatgcctcaacagattctta |
201 |
Q |
| |
|
||||||| |||||||||| || |||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
24707474 |
ccaagatcctgaaatatctatagaagctggcaactatgctaggttaatggttccatccctttttgcgtatggtcttctacaatgcctcaacagattctta |
24707573 |
T |
|
| Q |
202 |
caaactcaaaatattgtatttccaatga |
229 |
Q |
| |
|
|| |||||||||||||||||||||||| |
|
|
| T |
24707574 |
caggctcaaaatattgtatttccaatga |
24707601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University