View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8573_low_4 (Length: 444)
Name: NF8573_low_4
Description: NF8573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8573_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 21 - 430
Target Start/End: Complemental strand, 1239637 - 1239225
Alignment:
| Q |
21 |
atactgagacatgtgtaatccgaagagtttttgtgcttcataaatcgcaatactactacaaattgattatcatggaaaatgaaatcagtcctcgcgcaga |
120 |
Q |
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| T |
1239637 |
atactgagacatgtgtaatctgaagagtttctgtgcttcatagattgcaatactactacaagttgattatcatggaaaatgaaatcagtcctcgcgcaga |
1239538 |
T |
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| Q |
121 |
gagcatgaattaatatatatggtggagttattgaagaggtggaaatggagaagttacaaatagagtaattaagttaatatctcactgagtttcatgcata |
220 |
Q |
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| T |
1239537 |
gagcatgaattaatatatatggtggagttattgaagaggtggaaatggagaagttacaaatagagtaatcaagttaatatctcactgagtttcatgcata |
1239438 |
T |
|
| Q |
221 |
gcagcatgcagtagaggcaaacccttattattgaggcccacgaagaccaatttcgcacgtgtcaaataagaagctaaaacgtgtaagtttttctatagta |
320 |
Q |
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| T |
1239437 |
gcagcatgcagtagaggcaaacccttattattgaggcccacgaagaccaatttcgcacgtgtcaaataagaagctaaaacgtgtaagtttttctatagta |
1239338 |
T |
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| Q |
321 |
acaacgtagatgatgacgtgtaagtaaccaaacaaacgaacactgccgctttaattcacctttggaat---cttcattcactataaatacagacacaccc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1239337 |
acaacgtagatgatgacgtgtaagtaaccaaacaaacaaacactgccgctttaattcacctttggaatcttcttcattcactataaatacagacacaccc |
1239238 |
T |
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| Q |
418 |
ttctttgtttcat |
430 |
Q |
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| T |
1239237 |
ttctttgtttcat |
1239225 |
T |
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