View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8573_low_5 (Length: 392)
Name: NF8573_low_5
Description: NF8573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8573_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 32 - 388
Target Start/End: Complemental strand, 4844103 - 4843745
Alignment:
| Q |
32 |
gtgaaaatcatgtctatgaagttggcatcgtgtttgtgtctgtcaacacaatgacgaaaacttgtggccttagagctgataaagctgcagattgacttat |
131 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4844103 |
gtgaaaatcatgtctatgaagctggcatcgtgtttgtgtctgtcaacacaatgacgaaaacttgtggccttagagctgataaagctgcagattgacttat |
4844004 |
T |
|
| Q |
132 |
ttggagagcgcggctcggataatggttgatatttccaagtccaacagtattgtggtagagattagagaaatcaactcttcctgtcaaaactgctgaaact |
231 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4844003 |
ttggagagcgcggctcggataatggttgaaatttccaagtccaacagtattgtggtagagattagagaaatcaactcttcctgtcaaaactgctgaaact |
4843904 |
T |
|
| Q |
232 |
at--nnnnnnnnntctcgacctaaaagcccaagcacgctgcatttctttccacagatgaaaattgaaattcaaagaaacctcgacctaaaaaggacagnn |
329 |
Q |
| |
|
|| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4843903 |
atagagaaaaaaatctcgacctaaaagcccaaacacgttgcatttctttccacagatgaaaattgaaatccaaagaaacctcgacctaaaaaggacagaa |
4843804 |
T |
|
| Q |
330 |
nnnnngagggtcttggtcaaagaagtatttaacnnnnnnnggataatattcatcacatt |
388 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4843803 |
aaaaagagggtcttggtcaaagaagtatttaactttttttggataatattcatcacatt |
4843745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 228
Target Start/End: Complemental strand, 4824306 - 4824272
Alignment:
| Q |
194 |
tagagaaatcaactcttcctgtcaaaactgctgaa |
228 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
|
|
| T |
4824306 |
tagagaaatcaactcttcttgtcaaaactgctgaa |
4824272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University