View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8573_low_8 (Length: 281)
Name: NF8573_low_8
Description: NF8573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8573_low_8 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 14 - 264
Target Start/End: Original strand, 30148318 - 30148568
Alignment:
| Q |
14 |
ggtgttgtatgtttgttttgggagtcagaagctacttaaaaaggaacagatggaggcgttggcattcgggttggagaggtctgggacaccatttgtttgg |
113 |
Q |
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| T |
30148318 |
ggtgttgtatgtttgttttgggagtcagaagctacttaaaaaggaacagatggaggcgttggcattcgggttggagaggtctgggacaccatttgtttgg |
30148417 |
T |
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| Q |
114 |
gtggtcaaagagccttccacggcagagcagttggaggaaggttatggattggtgccggaggggtttgaggatcgtgtttcgggtagggggattgtggtga |
213 |
Q |
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| T |
30148418 |
gtggtcaaagagccttccacggcagagcagttggaggaaggttatggattggtgccggaggggtttgaggattgtgtttcgggtagggggattgtggtga |
30148517 |
T |
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| Q |
214 |
ggggttgggcaccacaaatggcgatattgggtcatcggattgttggcgggt |
264 |
Q |
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| T |
30148518 |
ggggttgggcaccacaaatggcgatattgggtcatcggattgttggcgggt |
30148568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 141310 - 141069
Alignment:
| Q |
15 |
gtgttgtatgtttgttttgggagtcagaagctacttaaaaaggaacagatggaggcgttggcattcgggttggagaggtctgggacaccatttgtttggg |
114 |
Q |
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| T |
141310 |
gtgttgtatgtttgttttgggagtcagaagttaatgagaagggatcaaatggaggcattggcattcgggttggaaagatccgggatccgatttgtttggg |
141211 |
T |
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| Q |
115 |
tggtcaaagagccttccacggcagagcagttggaggaaggttatggattggtgccggaggggtttgaggatcgtgtttcgggtagggggattgtggtgag |
214 |
Q |
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| T |
141210 |
tggtgaaggttccgtcgacggtggagcaaatagaggaaggttatggattggtgccggaggggtttgaggattgggtttcgggtagggggattgtggtgaa |
141111 |
T |
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| Q |
215 |
gggttgggcaccacaaatggcgatattgggtcatcggattgt |
256 |
Q |
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| T |
141110 |
gggttgggtcccacagatagcgatattaggtcatcgggttgt |
141069 |
T |
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