View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8574_high_3 (Length: 235)

Name: NF8574_high_3
Description: NF8574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8574_high_3
NF8574_high_3
[»] chr3 (6 HSPs)
chr3 (1-222)||(24638285-24638506)
chr3 (1-222)||(24647214-24647435)
chr3 (3-222)||(48099400-48099620)
chr3 (3-215)||(20620525-20620738)
chr3 (3-214)||(29074052-29074264)
chr3 (134-174)||(34013836-34013876)
[»] chr1 (2 HSPs)
chr1 (3-222)||(44387427-44387646)
chr1 (3-222)||(9932118-9932338)
[»] chr8 (4 HSPs)
chr8 (3-176)||(23584121-23584295)
chr8 (3-222)||(40270374-40270594)
chr8 (101-191)||(31343149-31343239)
chr8 (134-174)||(3378526-3378566)
[»] scaffold0134 (1 HSPs)
scaffold0134 (3-191)||(40894-41083)
[»] chr6 (2 HSPs)
chr6 (3-222)||(16594712-16594932)
chr6 (3-177)||(22207623-22207800)
[»] scaffold0655 (1 HSPs)
scaffold0655 (3-191)||(5652-5841)
[»] scaffold0009 (1 HSPs)
scaffold0009 (3-222)||(31945-32165)
[»] chr2 (2 HSPs)
chr2 (146-189)||(10260725-10260768)
chr2 (8-112)||(10260457-10260562)
[»] chr5 (1 HSPs)
chr5 (76-186)||(1545962-1546072)
[»] scaffold0169 (1 HSPs)
scaffold0169 (144-189)||(22287-22332)
[»] chr4 (3 HSPs)
chr4 (144-189)||(1853754-1853799)
chr4 (144-189)||(36650203-36650248)
chr4 (134-174)||(19336794-19336834)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 24638285 - 24638506
Alignment:
Q  1 ttgaagcgggaggtttacggacgcttagaatggtatgaaaatcatcaaaatgaactcaaagtaggcctttgtgatgatgtcagcaatctggtgacgagaa 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24638285 ttgaagcgggaggtttacggacgcttagaatggtctgaaaatcatcaaaatgaactcaaagtaggcctttgtgatgatgtcagcaatctggtgacgagaa 24638384  T
Q  101 ggaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatatgtttagtatgctgatgttgcaatggattaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24638385 ggaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatatgtttagtatgctgatgttgcaatggattaa 24638484  T
Q  201 cagcaaggtagatggcattaac 222  Q
    ||||||||||||||||||||||    
T  24638485 cagcaaggtagatggcattaac 24638506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 24647214 - 24647435
Alignment:
Q  1 ttgaagcgggaggtttacggacgcttagaatggtatgaaaatcatcaaaatgaactcaaagtaggcctttgtgatgatgtcagcaatctggtgacgagaa 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24647214 ttgaagcgggaggtttacggacgcttagaatggtctgaaaatcatcaaaaagaactcaaagtaggcctttgtgaagatgtcagcaatctggtgacgagaa 24647313  T
Q  101 ggaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatatgtttagtatgctgatgttgcaatggattaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24647314 ggaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatatgtttagtacgctgatgttgcaatggattaa 24647413  T
Q  201 cagcaaggtagatggcattaac 222  Q
    ||||||||||||||||||||||    
T  24647414 cagcaaggtagatggcattaac 24647435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 48099400 - 48099620
Alignment:
Q  3 gaagcgggaggtttacggacgcttagaatggtatgaaaatcatcaaaatgaactcaaagtaggcctttg-tgatgatgtcagcaatctggtgacgagaag 101  Q
    ||||||||||||| ||| || |||||| ||||  |||||||||||||| |||| |   ||||||||||| ||| ||||||||||||||||||||||||||    
T  48099400 gaagcgggaggttcacgaacacttagactggttcgaaaatcatcaaaaagaacacgcggtaggcctttggtgaagatgtcagcaatctggtgacgagaag 48099499  T
Q  102 gaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatatgtttagtatgctgatgttgcaatggattaac 201  Q
    ||||||||||||| | |||||| |||||    ||||||||  ||||||||||||| ||||||||||||||||||||  |||||||||| | ||||||| |    
T  48099500 gaacatgaaggacgcgtgcctggccacgagctaccttttctcgaacaaagtgaatgtccatctcaatatgtttagtgcgctgatgttgtactggattacc 48099599  T
Q  202 agcaaggtagatggcattaac 222  Q
    || |||||| |||||| ||||    
T  48099600 agaaaggtaaatggcactaac 48099620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 20620738 - 20620525
Alignment:
Q  3 gaagcgggaggtttacggacgcttagaatggtatgaaaatcatcaaaatgaactcaaagtaggcctttg-tgatgatgtcagcaatctggtgacgagaag 101  Q
    ||||||||||||| ||| ||||||| | ||||  |||||| ||||||| |||||| | || |||||||| ||| ||||||||||||||| ||||||||||    
T  20620738 gaagcgggaggttcacgaacgcttaaactggttcgaaaattatcaaaaagaactcgaggttggcctttggtgaagatgtcagcaatctgatgacgagaag 20620639  T
Q  102 gaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatatgtttagtatgctgatgttgcaatggattaac 201  Q
    ||||||||||||| | |||||   ||| || | |||||||   ||||||  |||| ||||||||||||||||||||| | ||||||| || ||||||| |    
T  20620638 gaacatgaaggacgcgtgccttgtcacccacggccttttctcaaacaaatagaatgtccatctcaatatgtttagtacgttgatgtttcattggattagc 20620539  T
Q  202 agcaaggtagatgg 215  Q
    || ||| |||||||    
T  20620538 agaaagctagatgg 20620525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 214
Target Start/End: Original strand, 29074052 - 29074264
Alignment:
Q  3 gaagcgggaggtttacggacgcttagaatggtatgaaaatcatcaaaatgaactcaaagtaggcctttg-tgatgatgtcagcaatctggtgacgagaag 101  Q
    |||||||||||||| | |||||||||| || |  |||||||||||||  |||  | | | || |||||| ||| ||| || | ||| || || |||||||    
T  29074052 gaagcgggaggtttccagacgcttagactgatccgaaaatcatcaaagagaatgcgaggaagccctttggtgaagatatctgtaatttgatgtcgagaag 29074151  T
Q  102 gaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatatgtttagtatgctgatgttgcaatggattaac 201  Q
    |||||||||| |  ||||||||||||||    || |||||| | ||||||||||| |||||| ||||||  || ||| |||||||||| |  |||||| |    
T  29074152 gaacatgaagtatgcatgcctgaccacgagctactttttcccgtacaaagtgaatctccatcacaatatacttggtacgctgatgttgtacaggattacc 29074251  T
Q  202 agcaaggtagatg 214  Q
    ||  |||||||||    
T  29074252 agagaggtagatg 29074264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 34013876 - 34013836
Alignment:
Q  134 accttttccagaacaaagtgaatatccatctcaatatgttt 174  Q
    ||||||||  ||||||| |||||||||||||||||||||||    
T  34013876 accttttcgcgaacaaaatgaatatccatctcaatatgttt 34013836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 44387646 - 44387427
Alignment:
Q  3 gaagcgggaggtttacggacgcttagaatggtatgaaaatcatcaaaatgaactcaaagtaggcctttg-tgatgatgtcagcaatctggtgacgagaag 101  Q
    ||||||||||||| || | |||||||| ||||  | |||||||||||| |||||| | ||||| ||||| ||| ||||| ||||||||| ||||||||||    
T  44387646 gaagcgggaggttcacaggcgcttagactggttcggaaatcatcaaaaagaactcgaggtaggactttggtgaagatgtgagcaatctgatgacgagaag 44387547  T
Q  102 gaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatatgtttagtatgctgatgttgcaatggattaac 201  Q
    ||||||||||||||| |||||| ||||||| |||||||||| ||||||||||||| ||||||||||||||||||||| | ||||| |||| ||||||| |    
T  44387546 gaacatgaaggacacgtgcctggccacgcacgaccttttcc-gaacaaagtgaatgtccatctcaatatgtttagtacgttgatgctgcactggattacc 44387448  T
Q  202 agcaaggtagatggcattaac 222  Q
    || ||||||||||||| ||||    
T  44387447 agaaaggtagatggcactaac 44387427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 9932118 - 9932338
Alignment:
Q  3 gaagcgggaggtttacggacgcttagaatggtatgaaaatcatcaaaatgaactcaaagtaggcctttg-tgatgatgtcagcaatctggtgacgagaag 101  Q
    ||||||||||||| ||| || |||||| ||||  |||||||||||||| |||| |   ||||||||||| ||| ||||||||||||||||||||||||||    
T  9932118 gaagcgggaggttcacgaacacttagactggttcgaaaatcatcaaaaagaacacgcggtaggcctttggtgaagatgtcagcaatctggtgacgagaag 9932217  T
Q  102 gaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatatgtttagtatgctgatgttgcaatggattaac 201  Q
    ||||||||||||| | |||||| |||||    ||||||||  ||||||||||||| ||||||||||||||||||||  |||||||||| | ||||||| |    
T  9932218 gaacatgaaggacgcgtgcctggccacgagctaccttttctcgaacaaagtgaatgtccatctcaatatgtttagtgcgctgatgttgtactggattacc 9932317  T
Q  202 agcaaggtagatggcattaac 222  Q
    || |||||| |||||| ||||    
T  9932318 agaaaggtaaatggcactaac 9932338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 176
Target Start/End: Complemental strand, 23584295 - 23584121
Alignment:
Q  3 gaagcgggaggtttacggacgcttagaatggtatgaaaatcatcaaaatgaactcaaagtaggcctttg-tgatgatgtcagcaatctggtgacgagaag 101  Q
    ||||||||||||| ||||||| ||||| || | || |||||||||||| |||| | | |||| |||||| ||| || | |||||||||||||||||||||    
T  23584295 gaagcgggaggttcacggacgtttagactgatctggaaatcatcaaaaagaacacgaggtagacctttggtgaagacgacagcaatctggtgacgagaag 23584196  T
Q  102 gaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatatgtttag 176  Q
    ||||||||||||| | |||||| |||||   ||||||| |  ||||||||||||| |||||||||||||||||||    
T  23584195 gaacatgaaggacgcgtgcctggccacgagcgacctttcctcgaacaaagtgaatgtccatctcaatatgtttag 23584121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 222
Target Start/End: Original strand, 40270374 - 40270594
Alignment:
Q  3 gaagcgggaggtttacggacgcttagaatggtatgaaaatcatcaaaatgaactcaaagtaggcctttg-tgatgatgtcagcaatctggtgacgagaag 101  Q
    ||||||||||||| ||||||||| ||| ||||  |||||||||||||  |||  | | | || |||||| ||| ||||||||| ||||| || |  || |    
T  40270374 gaagcgggaggttcacggacgctaagactggtccgaaaatcatcaaagagaatgcgaggaagtcctttggtgaagatgtcagcgatctgatgtcttgagg 40270473  T
Q  102 gaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatatgtttagtatgctgatgttgcaatggattaac 201  Q
    ||||||||||||| |  |||||||||||   |||||||||| ||||||| ||||| | |||||||||||||||| |  ||||||| ||||  |||||| |    
T  40270474 gaacatgaaggacgcgagcctgaccacgagcgaccttttcccgaacaaaatgaatgttcatctcaatatgtttaatgcgctgatgctgcacaggattacc 40270573  T
Q  202 agcaaggtagatggcattaac 222  Q
    ||  || ||||||||| ||||    
T  40270574 agatagatagatggcactaac 40270594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 101 - 191
Target Start/End: Complemental strand, 31343239 - 31343149
Alignment:
Q  101 ggaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatatgtttagtatgctgatgttgca 191  Q
    ||||||||||| |||||||| ||||||||    || |||||| ||||||| ||||| ||||||||||||||||| ||| ||||||||||||    
T  31343239 ggaacatgaagtacacatgcttgaccacgagctactttttcccgaacaaaatgaatgtccatctcaatatgtttggtacgctgatgttgca 31343149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 3378566 - 3378526
Alignment:
Q  134 accttttccagaacaaagtgaatatccatctcaatatgttt 174  Q
    ||||||||  ||||||| |||||||||||||||||||||||    
T  3378566 accttttcgcgaacaaaatgaatatccatctcaatatgttt 3378526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 191
Target Start/End: Complemental strand, 41083 - 40894
Alignment:
Q  3 gaagcgggaggtttacggacgcttagaatggtatgaaaatcatcaaaatgaactcaaagtaggcctttg-tgatgatgtcagcaatctggtgacgagaag 101  Q
    ||||||||||||| ||||||||||||| ||||  |||| ||||||||  |||  | | | || |||||| ||| ||| || |||||||| || ||||| |    
T  41083 gaagcgggaggttcacggacgcttagactggtccgaaagtcatcaaagagaatgcgaggaagccctttggtgaagatatcggcaatctgatgtcgagagg 40984  T
Q  102 gaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatatgtttagtatgctgatgttgca 191  Q
    |||||||||| || | |||||||||||     ||||||||| | ||||||||||| ||||| ||||||||||| ||| ||||||||||||    
T  40983 gaacatgaagtacgcgtgcctgaccacaggctaccttttcccgtacaaagtgaatgtccatttcaatatgtttggtacgctgatgttgca 40894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 16594932 - 16594712
Alignment:
Q  3 gaagcgggaggtttacggacgcttagaatggtatgaaaatcatcaaaatgaactcaaagtaggcctttg-tgatgatgtcagcaatctggtgacgagaag 101  Q
    ||||||||||||| |||||| |||||| | ||  |||||||||||||  |||  | | | || |||||| ||| |||||| ||||| || || | ||| |    
T  16594932 gaagcgggaggttcacggacacttagactagtccgaaaatcatcaaagagaatgcgaggaagtcctttggtgaagatgtctgcaatttgatgtctagagg 16594833  T
Q  102 gaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatatgtttagtatgctgatgttgcaatggattaac 201  Q
    ||||||||||||| |  ||||| |||||   |||||||||| ||||||| ||||| |||||||||||||| |||||  ||||||| ||||  |||||| |    
T  16594832 gaacatgaaggacgcgagcctggccacgagcgaccttttcccgaacaaaatgaatgtccatctcaatatgcttagtgcgctgatgctgcacaggattacc 16594733  T
Q  202 agcaaggtagatggcattaac 222  Q
    ||  || ||||||||| ||||    
T  16594732 agatagatagatggcactaac 16594712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 177
Target Start/End: Original strand, 22207623 - 22207800
Alignment:
Q  3 gaagcgggaggtttacggacgcttagaatggtatgaaaatcatcaaaatgaactcaaagtaggcctttg-tgatgatgtcagcaatctggtgacgaga-- 99  Q
    ||||||||||||| ||  ||| ||||| |||| || |||||||| |||  ||| | | |||||  |||| ||| || ||||||| ||| |||||||||      
T  22207623 gaagcgggaggttcacaaacgtttagactggtctggaaatcatcgaaaaaaacacgaggtaggtttttggtgaagacgtcagcattctagtgacgagaga 22207722  T
Q  100 aggaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatatgtttagt 177  Q
    ||||||||||||||    |||||| |||||   |||||||||  ||||||||||||| |||||||||| |||||||||    
T  22207723 aggaacatgaaggatgtgtgcctggccacgagcgaccttttctcgaacaaagtgaatgtccatctcaacatgtttagt 22207800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 191
Target Start/End: Original strand, 5652 - 5841
Alignment:
Q  3 gaagcgggaggtttacggacgcttagaatggtatgaaaatcatcaaaatgaactcaaagtaggcctttg-tgatgatgtcagcaatctggtgacgagaag 101  Q
    ||||||||||||| ||||||||||||| ||||   ||||||||||||  |||  | | | || |||||| ||| ||| || |||||||| || |||||||    
T  5652 gaagcgggaggttcacggacgcttagactggtccaaaaatcatcaaagagaatgcgaggaagccctttgatgaagatatctgcaatctgatgtcgagaag 5751  T
Q  102 gaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatatgtttagtatgctgatgttgca 191  Q
    |||||||||| || | ||||| ||||||    || |||||| | ||||||||||| ||||| |||||||| || ||| | ||||||||||    
T  5752 gaacatgaagtacgcgtgcctcaccacgagctactttttcccgtacaaagtgaatgtccatttcaatatgcttggtacgttgatgttgca 5841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 32165 - 31945
Alignment:
Q  3 gaagcgggaggtttacggacgcttagaatggtatgaaaatcatcaaaatgaactcaaagtaggcctttg-tgatgatgtcagcaatctggtgacgagaag 101  Q
    ||||||||||||| ||||||||| ||| ||||  |||||||||||||  |||  | | | ||| ||||| ||| |||||  || ||||| || |  || |    
T  32165 gaagcgggaggttcacggacgctaagactggtccgaaaatcatcaaatagaatgcgaggaaggtctttggtgaagatgtatgcgatctgatgtcttgagg 32066  T
Q  102 gaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatatgtttagtatgctgatgttgcaatggattaac 201  Q
     |||||||||||| |  |||||||||||    ||||||||| ||||||| ||||| ||||||||||||||||| ||  ||||||| ||||  |||||| |    
T  32065 aaacatgaaggacgcgagcctgaccacgagcaaccttttcccgaacaaaatgaatgtccatctcaatatgttttgtgcgctgatgctgcacaggattacc 31966  T
Q  202 agcaaggtagatggcattaac 222  Q
    ||  || ||||||||| ||||    
T  31965 agatagatagatggcactaac 31945  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 189
Target Start/End: Complemental strand, 10260768 - 10260725
Alignment:
Q  146 acaaagtgaatatccatctcaatatgtttagtatgctgatgttg 189  Q
    ||||||||||| |||||||||||||| |||||| ||||||||||    
T  10260768 acaaagtgaatgtccatctcaatatgcttagtacgctgatgttg 10260725  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 10260457 - 10260562
Alignment:
Q  8 gggaggtttacggacgcttagaatggtatgaaaatcatcaaaatgaactcaaagtaggcctttg-tgatgatgtcagcaatctggtgacgagaaggaaca 106  Q
    |||||||| |||||||||||||   ||  ||| |||| ||||| |||||| |  |||| ||||| ||| ||| ||||| ||||| |||||||||||||||    
T  10260457 gggaggttcacggacgcttagacatgtccgaatatcagcaaaaagaactcgagatagggctttggtgaagatatcagctatctgatgacgagaaggaaca 10260556  T
Q  107 tgaagg 112  Q
    ||||||    
T  10260557 tgaagg 10260562  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 186
Target Start/End: Original strand, 1545962 - 1546072
Alignment:
Q  76 gatgtcagcaatctggtgacgagaaggaacatgaaggacacatgcctgaccacgcatgaccttttccagaacaaagtgaatatccatctcaatatgttta 175  Q
    |||||| |||||||| || |  || ||||||||||| || | |||||||||||  |  || |||||| | ||||| ||||| |||||||||||||||||     
T  1545962 gatgtctgcaatctgatgtctggagggaacatgaagtacgcgtgcctgaccaccgactactttttcccgtacaaaatgaatgtccatctcaatatgtttg 1546061  T
Q  176 gtatgctgatg 186  Q
    ||| |||||||    
T  1546062 gtacgctgatg 1546072  T

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Target: scaffold0169 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 22332 - 22287
Alignment:
Q  144 gaacaaagtgaatatccatctcaatatgtttagtatgctgatgttg 189  Q
    ||||||| |||||||||||||| |||||||||||  ||||||||||    
T  22332 gaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttg 22287  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 1853799 - 1853754
Alignment:
Q  144 gaacaaagtgaatatccatctcaatatgtttagtatgctgatgttg 189  Q
    ||||||| |||||||||||||| |||||||||||  ||||||||||    
T  1853799 gaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttg 1853754  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 36650248 - 36650203
Alignment:
Q  144 gaacaaagtgaatatccatctcaatatgtttagtatgctgatgttg 189  Q
    ||||||| |||||||||||||| |||||||||||  ||||||||||    
T  36650248 gaacaaaatgaatatccatctcgatatgtttagtgcgctgatgttg 36650203  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 19336794 - 19336834
Alignment:
Q  134 accttttccagaacaaagtgaatatccatctcaatatgttt 174  Q
    ||||||||  ||||||| |||||||||||||||||||||||    
T  19336794 accttttcgcgaacaaaatgaatatccatctcaatatgttt 19336834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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