View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8574_low_1 (Length: 662)
Name: NF8574_low_1
Description: NF8574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8574_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 616; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 17 - 644
Target Start/End: Original strand, 31278243 - 31278870
Alignment:
| Q |
17 |
catcacataatgggtgattgggtgaattccaccaccgggaaccgcttccaaattcaccagatcatggcatatcagattctccaactccatgaaaatgcct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31278243 |
catcacataatgggtgattgggtgaattccaccaccgggaaccgcttccaaattcatcggatcatggcatatcagattctccaactccatgaaaatgcct |
31278342 |
T |
|
| Q |
117 |
atgattgcttcacccaatctcttccaaattgtggttgcttcgttttgcatcgacccattgtattgatcacggaacagggactcaaattctggaattaggt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31278343 |
atgattgcttcacccaatctcttccaaattgtggttgcttcgttttgcatcgacccattgtattgatcacggaacagggactcaaattctggaattaggt |
31278442 |
T |
|
| Q |
217 |
cgcgcattgtttcaaacatgtcaagaactctaaacaacctttcgggtgatcggcttccgatggcgatagcttcggcgaaattcagcagttggagcatgga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31278443 |
cgcgcattgtttcaaacatgtcaagaactctaaacaacctttcgggtgatcggcttccgatggcgatagcttcggcaaaattcagcagttggagcatgga |
31278542 |
T |
|
| Q |
317 |
ttccctgcaaatatctgtgaaggataaatcagcagtggtggacaatccaaagaaaacttgatcgcaaagtcgccgttcagagcggaacaatattctcaaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31278543 |
ttccctgcaaatatctgtgaaggataaatcagcagtggtggacaatccaaagaaaacttgatcgcaaagtcgccgttcagagcggaacaatattctcaaa |
31278642 |
T |
|
| Q |
417 |
gccactttggaaactttaatccatcttttaatctcgtcttccaactctttccatgtcaacatctgaagggcttcaatgctaagtttctggaaccaaaacc |
516 |
Q |
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| T |
31278643 |
gccactttggaaactttaatccatcttttaatctcgtcttccaactctttccatgtcaacatctgaagggcttcaatgctaagtttctggaaccaaaacc |
31278742 |
T |
|
| Q |
517 |
ttgagaggctttctaccaaacattcccttcgaatattgctatacacgtcagaaaattccctttcaaacccggagctaaccatcaacttggctgttttgtg |
616 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31278743 |
ttgagaggctttctaccaaacattcccttcgaatattgctatacacgtcagaaaattccctttcaaacccggagctaaccatcaacttggctgttttgtg |
31278842 |
T |
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| Q |
617 |
aaggttgtcgattgtttcagttggcaag |
644 |
Q |
| |
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| T |
31278843 |
aaggttgtcgattgtttcagttggcaag |
31278870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 87 - 644
Target Start/End: Complemental strand, 31285983 - 31285426
Alignment:
| Q |
87 |
atcagattctccaactccatgaaaatgcctatgattgcttcacccaatctcttccaaattgtggttgcttcgttttgcatcgacccattgtattgatcac |
186 |
Q |
| |
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|||| |||| |||||||| ||||||||||| | |||||| |||||||||||||||||||| ||||||| |||||||| ||||||| |||||||||||| |
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| T |
31285983 |
atcaaattcgccaactccttgaaaatgcctccaactgcttcccccaatctcttccaaattgttgttgctttgttttgcagcgacccagtgtattgatcac |
31285884 |
T |
|
| Q |
187 |
ggaacagggactcaaattctggaattaggtcgcgcattgtttcaaacatgtcaagaactctaaacaacctttcgggtgatcggcttccgatggcgatagc |
286 |
Q |
| |
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| |||| ||| | ||| || ||||||| || | || ||||||||||||||||| |||||||||| || || |||||||||||||| | || ||||| |
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| T |
31285883 |
gaaacacggatttaaactcaggaattaaatcacacaatgtttcaaacatgtcaatgactctaaacagccgctcaggtgatcggcttccattagcaatagc |
31285784 |
T |
|
| Q |
287 |
ttcggcgaaattcagcagttggagcatggattccctgcaaatatctgtgaaggataaatcagcagtggtggacaatccaaagaaaacttgatcgcaaagt |
386 |
Q |
| |
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||||| ||||||||||| || || ||||||||||||||| ||| |||||||||||||||||||||| ||| || ||||| ||||| |||| |||||| |
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| T |
31285783 |
atcggcaaaattcagcagctgaagtgtggattccctgcaaacatccgtgaaggataaatcagcagtggaggagaacccaaataaaacccgatcacaaagt |
31285684 |
T |
|
| Q |
387 |
cgccgttcagagcggaacaatattctcaaagccactttggaaactttaatccatcttttaatctcgtcttccaactctttccatgtcaacatctgaaggg |
486 |
Q |
| |
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|||||||| | | || ||||| |||||||||| ||||| |||||||||||||| |||||| ||||| | || ||||||| ||||||||||| |
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| T |
31285683 |
ttccgttcagtgggaaataatatcttcaaagccacgttggatgttttaatccatctttcaatctcttcttcaagttccttccatgacaacatctgaacat |
31285584 |
T |
|
| Q |
487 |
cttcaatgctaagtttctggaaccaaaaccttgagaggctttctaccaaacattcccttcgaatattgctatacacgtcagaaaattccctttcaaaccc |
586 |
Q |
| |
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|||||| | |||||| || || || ||||| | |||||||||||||||||| || | | || |||||| ||| || || | | | |||||||| |
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| T |
31285583 |
cttcaacattgtgtttcttgagccctaatcttgataagctttctaccaaacattctctcctgcaactgatatacatgtccgagaagtgcttctcaaaccc |
31285484 |
T |
|
| Q |
587 |
ggagctaaccatcaacttggctgttttgtgaaggttgtcgattgtttcagttggcaag |
644 |
Q |
| |
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|| |||||||||||||| || ||||| |||| |||||| | |||||||||||||||| |
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| T |
31285483 |
ggcactaaccatcaacttcgcagttttatgaatgttgtccactgtttcagttggcaag |
31285426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 300
Target Start/End: Complemental strand, 31275712 - 31275499
Alignment:
| Q |
87 |
atcagattctccaactccatgaaaatgcctatgattgcttcacccaatctcttccaaattgtggttgcttcgttttgcatcgacccattgtattgatcac |
186 |
Q |
| |
|
|||| ||||||||||||||| |||||||| | |||||||| |||||||||||||| || || |||| || || || ||| || | || ||||||| |
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| T |
31275712 |
atcaaattctccaactccataaaaatgcccctaattgcttcccccaatctcttccatatagtaattgcctcattcctcaaagacacactatactgatcac |
31275613 |
T |
|
| Q |
187 |
ggaacagggactcaaattctggaattaggtcgcgcattgtttcaaacatgtcaagaactctaaacaacctttcgggtgatcggcttccgatggcgatagc |
286 |
Q |
| |
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||||| ||||||| || | ||||||||| |||| ||||||||||| || |||| | ||||||||| || || || |||||||| || |||| || |
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| T |
31275612 |
agaacaacaactcaaactccgaaattaggtcacgcaatgtttcaaacacatccagaattttaaacaaccgctccggcgaacggcttccaattgcgaccgc |
31275513 |
T |
|
| Q |
287 |
ttcggcgaaattca |
300 |
Q |
| |
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||||||||||||| |
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| T |
31275512 |
atcggcgaaattca |
31275499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 198 - 267
Target Start/End: Complemental strand, 26909028 - 26908959
Alignment:
| Q |
198 |
tcaaattctggaattaggtcgcgcattgtttcaaacatgtcaagaactctaaacaacctttcgggtgatc |
267 |
Q |
| |
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|||||||| ||||||||||| |||||||| ||||||| ||||| ||||||||||||| ||| ||||||| |
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| T |
26909028 |
tcaaattcaggaattaggtcacgcattgtctcaaacacatcaagcactctaaacaaccgttcaggtgatc |
26908959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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