View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8574_low_10 (Length: 232)

Name: NF8574_low_10
Description: NF8574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8574_low_10
NF8574_low_10
[»] chr3 (5 HSPs)
chr3 (1-232)||(24638031-24638262)
chr3 (1-232)||(24646964-24647191)
chr3 (177-232)||(20619718-20619773)
chr3 (1-88)||(24716630-24716712)
chr3 (198-232)||(20620764-20620798)
[»] scaffold0197 (2 HSPs)
scaffold0197 (177-232)||(7249-7304)
scaffold0197 (103-159)||(7339-7395)
[»] chr8 (1 HSPs)
chr8 (177-232)||(15935270-15935325)


Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 24638031 - 24638262
Alignment:
Q  1 acaagcatggggtggaggctctagctgatgcaaacagtgtaactgagcatacttgaattaatctgttgcttgcagacttgaattacaaaaggaggtacta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24638031 acaagcatggggtggaggctctagctgatgcaaacagtgtaactgagcatacttgaattaatctgttgcttgcagacttgaattacaaaaggaggtacta 24638130  T
Q  101 attaaaggaaatcaatccgtgaattttatttgtaatgatcaagagtatatatacagttacaagtggagtcaaacatgagagtaattacaaaataattacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24638131 attaaaggaaatcaatccgtgaattttatttgtaatgatcaagagtatatatacagttacaagtggagtcaaacatgagagtaattacaaaataattacc 24638230  T
Q  201 aacataactactaacataattacataaagtca 232  Q
    ||||||||||||||||||||||||||||||||    
T  24638231 aacataactactaacataattacataaagtca 24638262  T

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Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 24646964 - 24647191
Alignment:
Q  1 acaagcatggggtggaggctctagctgatgcaaacagtgtaactgagcatacttgaattaatctgttgcttgcagacttgaattacaaaaggaggtacta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||    
T  24646964 acaagcatggggtggaggctctagctgatgcaaacagtgtaactgagcatacttgaat----ctgttgcttgcagacttgaattacaaaaggaggtacta 24647059  T
Q  101 attaaaggaaatcaatccgtgaattttatttgtaatgatcaagagtatatatacagttacaagtggagtcaaacatgagagtaattacaaaataattacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24647060 attaaaggaaatcaatccgtgaattttatttgtaatgatcaagagtatatatacagttacaagtggagtcaaacatgagagtaattacaaaataattacc 24647159  T
Q  201 aacataactactaacataattacataaagtca 232  Q
    |||||| |||||||||||||||||||||||||    
T  24647160 aacatagctactaacataattacataaagtca 24647191  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 20619773 - 20619718
Alignment:
Q  177 gagagtaattacaaaataattaccaacataactactaacataattacataaagtca 232  Q
    ||||||||||| |||||||| |||||| ||| ||||||||||||||||||||||||    
T  20619773 gagagtaattaaaaaataataaccaacgtaaatactaacataattacataaagtca 20619718  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 24716630 - 24716712
Alignment:
Q  1 acaagcatggggtggaggctctagctgatgcaaacagtgtaactgagcatacttgaattaatctgttgcttgcagacttgaattacaa 88  Q
    ||||||||| |||||||| ||||||||||||||||| ||| |||||||||  |||    |||||||| ||||||||||||||||||||    
T  24716630 acaagcatgaggtggagg-tctagctgatgcaaacaatgtcactgagcattattg----aatctgttccttgcagacttgaattacaa 24716712  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 232
Target Start/End: Complemental strand, 20620798 - 20620764
Alignment:
Q  198 accaacataactactaacataattacataaagtca 232  Q
    |||||||||| ||||||||||||||||||||||||    
T  20620798 accaacataattactaacataattacataaagtca 20620764  T

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Target: scaffold0197 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 7304 - 7249
Alignment:
Q  177 gagagtaattacaaaataattaccaacataactactaacataattacataaagtca 232  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||||||||| ||||    
T  7304 gagagtaattacaaagtaataaccaacataattactaacataattacataaggtca 7249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 7395 - 7339
Alignment:
Q  103 taaaggaaatcaatccgtgaattttatttgtaatgatcaagagtatatatacagtta 159  Q
    |||||||||||||| ||||||||| |||  ||||||||||||||||||||| |||||    
T  7395 taaaggaaatcaattcgtgaatttcattgataatgatcaagagtatatatatagtta 7339  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 15935270 - 15935325
Alignment:
Q  177 gagagtaattacaaaataattaccaacataactactaacataattacataaagtca 232  Q
    |||||| ||||||||||||| |||||||||| || |||||||||||||||||||||    
T  15935270 gagagtgattacaaaataataaccaacataattagtaacataattacataaagtca 15935325  T

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