View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8574_low_2 (Length: 522)
Name: NF8574_low_2
Description: NF8574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8574_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 12 - 500
Target Start/End: Complemental strand, 40225862 - 40225374
Alignment:
| Q |
12 |
cgagtttggtgttttgaccgaacgatatggattgaaaccccaaggtaaatcagctccaatggcttccataaagcgatccacacccacacctcccaccaat |
111 |
Q |
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| T |
40225862 |
cgagtttggtgttttgaccgaacgatatggattgaaaccccaaggtaaatcagctccaatggcttccataaagcgatccacacccacacctcccaccaat |
40225763 |
T |
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| Q |
112 |
tctcacttccaatcccaaaacggatccagatctcctcaacattcaactttcgattttgatttcggcgttaaaccacatcactcagggggttttggcgatg |
211 |
Q |
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| T |
40225762 |
tctcacttccaatcccaaaacggatccagatctcctcaacattcaactttcgattttgatttcggcgttaaaccacagcactcagggggttttggcgatg |
40225663 |
T |
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| Q |
212 |
ccattgacgatatcttcggtggaaacaccaaatcaaaggtcggctatggagtttcgtttgacgatgatccgatattcggttcggtttcaacatcttcttc |
311 |
Q |
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| T |
40225662 |
ccattgacgatatcttcggtggaaacaccaaatcaaaggtcggctatggagtttcgtttgacgatgatccgatattcggatcggtttcaacatcttcttc |
40225563 |
T |
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| Q |
312 |
gtcgtctcaagtttatgtagatgatatattcggtggagtcaatcaaaaaactgtcggtgttgatgatttattaaataacattggtggattgcatgcaaca |
411 |
Q |
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| T |
40225562 |
gtcgtctcaagtttatgtagatgatatattcggtggagtcaatcaaaaaactgtcggtgttgatgatttattaaataacattggtggattgcatgcaaca |
40225463 |
T |
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| Q |
412 |
aactctaaaagttcgatnnnnnnntcgcatgattttgatgacttcatgtctgggtttggtggaagcagcgtttccaataatgggtatgg |
500 |
Q |
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| T |
40225462 |
aactctaaaagttcgattaaaaaatcgcatgattttggtgacttcatgtctggctttggtggaagcagcgtttccaataatgggtatgg |
40225374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 322 - 495
Target Start/End: Original strand, 36647710 - 36647886
Alignment:
| Q |
322 |
gtttatgtagatgatatattcggtggagtcaatcaaaaaactgtcggtgttgatgatttattaaataacattggtggattgcatgcaacaaactctaaaa |
421 |
Q |
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| T |
36647710 |
gtttatgtagatgatatattcgatggagttagtgaaaaaactgtcggtcttgatgatttattagataagattggtggattgcatgcaccaagcgctaaaa |
36647809 |
T |
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| Q |
422 |
gttcgat---nnnnnnntcgcatgattttgatgacttcatgtctgggtttggtggaagcagcgtttccaataatggg |
495 |
Q |
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| T |
36647810 |
gttccattaaaaaaaaatagcatgattttgatgacttcatgattgggtttggtggaagcagcatatccaataatggg |
36647886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 323 - 495
Target Start/End: Original strand, 36614049 - 36614226
Alignment:
| Q |
323 |
tttatgtagatgatatattcggtggagtcaatcaaaaaactgtcggtgttgatgatttattaaataacattggtggattgcatgcaacaaactctaaaag |
422 |
Q |
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| T |
36614049 |
tttatgtagatgatatattcgatggagttagtgaaaaaactgtcggtcttgatgatttattagataagatcggtggattgcatgcaccaagcgctaaaag |
36614148 |
T |
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| Q |
423 |
ttcgat-----nnnnnnntcgcatgattttgatgacttcatgtctgggtttggtggaagcagcgtttccaataatggg |
495 |
Q |
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| T |
36614149 |
ttccattaaaaaaaaaaatagcatgattttgatgacttcatgattgggtttggtggaagcagcatatccaataatggg |
36614226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 307 - 495
Target Start/End: Complemental strand, 2189408 - 2189216
Alignment:
| Q |
307 |
tcttcgtcgtctcaagtttatgtagatgatatattcggtggagtcaatcaaaaaactgtcggtgttgatgatttattaaataacattggtggattgcatg |
406 |
Q |
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| T |
2189408 |
tcttcgttgtcgcaggtttatgtagatgatatattcgatggagttagtgaaaaaactgtcggtcttgatgatttattagataagatcggtggattgcatg |
2189309 |
T |
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| Q |
407 |
caacaaactctaaaagttcgat----nnnnnnntcgcatgattttgatgacttcatgtctgggtttggtggaagcagcgtttccaataatggg |
495 |
Q |
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| T |
2189308 |
caccaagcgctaaaagttccattaaaaaaaaaatagcatgattttgatgacttcatgattgggtttggtggaagcagcatatccaataatggg |
2189216 |
T |
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