View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8574_low_3 (Length: 350)

Name: NF8574_low_3
Description: NF8574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8574_low_3
NF8574_low_3
[»] chr4 (20 HSPs)
chr4 (18-350)||(55505251-55505584)
chr4 (18-211)||(640672-640868)
chr4 (18-167)||(553283-553432)
chr4 (32-211)||(6006087-6006266)
chr4 (18-164)||(546720-546866)
chr4 (71-201)||(1600301-1600431)
chr4 (32-139)||(1524643-1524750)
chr4 (35-133)||(1545611-1545709)
chr4 (46-140)||(1552944-1553038)
chr4 (18-87)||(566073-566142)
chr4 (19-140)||(570182-570303)
chr4 (102-138)||(370760-370796)
chr4 (107-211)||(1548659-1548763)
chr4 (95-139)||(7226106-7226150)
chr4 (32-211)||(1528363-1528542)
chr4 (106-161)||(3438797-3438852)
chr4 (18-135)||(1489507-1489624)
chr4 (94-139)||(8187313-8187358)
chr4 (95-139)||(659540-659584)
chr4 (32-68)||(1508163-1508199)
[»] chr1 (4 HSPs)
chr1 (18-204)||(43633964-43634132)
chr1 (282-328)||(43995816-43995862)
chr1 (32-211)||(9580840-9581008)
chr1 (158-211)||(9586422-9586475)
[»] chr8 (5 HSPs)
chr8 (35-208)||(32151064-32151237)
chr8 (37-137)||(5767820-5767920)
chr8 (37-137)||(14002887-14002987)
chr8 (18-143)||(27922336-27922461)
chr8 (106-161)||(17628248-17628303)
[»] chr3 (3 HSPs)
chr3 (18-156)||(51113927-51114065)
chr3 (35-138)||(514891-514994)
chr3 (18-138)||(51121039-51121159)
[»] chr6 (3 HSPs)
chr6 (81-208)||(9411118-9411245)
chr6 (19-62)||(6426420-6426463)
chr6 (18-136)||(28934884-28935002)
[»] chr2 (1 HSPs)
chr2 (18-139)||(45245231-45245352)
[»] chr5 (1 HSPs)
chr5 (31-139)||(41889720-41889828)


Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 350
Target Start/End: Original strand, 55505251 - 55505584
Alignment:
Q  18 agtgaaacacgtgttagaaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatgctagagttgttgactcaatggtattttca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  55505251 agtgaaacacgtgttagaaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatactagtgttgttgactcaatggtattttca 55505350  T
Q  118 aggccatcattgagaaagataacagcgccacctggttttcatttgagtgacgaaaagaagaaactcttcttgcgtcaaggatgcattgtttgctctaaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55505351 aggccatcattgagaaagataacagcgccacctggttttcatttgagtgacgaaaagaagaaactcttcttgcgtcaaggatgcattgtttgctctaaaa 55505450  T
Q  218 gtacttagctatgaagtgtaagatgtttttgttttcggatctatttccatgagaa-nnnnnnnnnaaataaaaaattatcatagaatcgtatatttaaaa 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||    
T  55505451 gtacttagctatgaagtgtaagatgtttttgttttcggatctatttccatgagaattttttttttaaataaaaaattatcatagaatcgtatatttaaaa 55505550  T
Q  317 ctatccgcatatacaacacttttgtcctttgaat 350  Q
    ||||||||||||||||| ||||||||||||||||    
T  55505551 ctatccgcatatacaacgcttttgtcctttgaat 55505584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 640868 - 640672
Alignment:
Q  18 agtgaaacacgtgttagaaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatgctagagttgttgactcaatggtattttca 117  Q
    |||||| || ||| |||||||||||| | || |||||||| |||| || || |||||| |||||||| ||||||  || |||||||||||||||||||||    
T  640868 agtgaatcatgtggtagaaaactgcaaagaattaagagaggtcaatttaaagggttgtaataaagtgaatgctaatgtcgttgactcaatggtattttca 640769  T
Q  118 aggccatcattgagaaagataacagcgccacctggttttcatttgagtgacgaaaagaagaaa---ctcttcttgcgtcaaggatgcattgtttgct 211  Q
    |||||||||||||||||||||  | | |||||||||||| ||||||  ||| || ||||||||   || ||||||||||||||||||  ||||||||    
T  640768 aggccatcattgagaaagatagtaactccacctggttttgatttgaacgacaaagagaagaaacttctattcttgcgtcaaggatgccatgtttgct 640672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 553432 - 553283
Alignment:
Q  18 agtgaaacacgtgttagaaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatgctagagttgttgactcaatggtattttca 117  Q
    |||||| || ||| ||||||||||||||||||| ||||||||| | |||   |||||||||||||||||||| |  ||||||| ||||||||||  ||||    
T  553432 agtgaatcatgtggtagaaaactgcacacaacttagagagatcgatttggggggttgtgataaagtgcatgcaaatgttgttgcctcaatggtacattca 553333  T
Q  118 aggccatcattgagaaagataacagcgccacctggttttcatttgagtga 167  Q
     || |||||||||||||||||  ||| |||||||||||| ||||||||||    
T  553332 cggacatcattgagaaagataggagctccacctggttttgatttgagtga 553283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 32 - 211
Target Start/End: Complemental strand, 6006266 - 6006087
Alignment:
Q  32 tagaaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatgctagagttgttgactcaatggtattttcaaggccatcattgag 131  Q
    |||||||||||| |||| | |||||||| || ||| | | |||| ||||||||   |||   ||||||||||  ||||||||| ||||||||||||||||    
T  6006266 tagaaaactgcaaacaattgagagagataaatttgcaggattgtcataaagtggtagctgatgttgttgacttgatggtatttacaaggccatcattgag 6006167  T
Q  132 aaagataacagcgccacctggttttcatttgagtgacgaaaagaagaaactcttcttgcgtcaaggatgcattgtttgct 211  Q
    ||||||||| || ||||||||||||  ||  ||||||   |||   ||||||||||||||||| |||||| |||||||||    
T  6006166 aaagataactgctccacctggtttttgttgtagtgacagcaagcgaaaactcttcttgcgtcatggatgccttgtttgct 6006087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 546866 - 546720
Alignment:
Q  18 agtgaaacacgtgttagaaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatgctagagttgttgactcaatggtattttca 117  Q
    ||||||||| ||| |||||||||||||| |||||||||||||||| || |  | |||| |||||||| ||| ||  |  ||||  |||||| |||||| |    
T  546866 agtgaaacatgtgctagaaaactgcacaaaactaagagagatcaatttaagggcttgtaataaagtgaatgttaatgccgttgcttcaatgttattttta 546767  T
Q  118 aggccatcattgagaaagataacagcgccacctggttttcatttgag 164  Q
    |||||||||||||||||||||| ||| ||| |||||||  |||||||    
T  546766 aggccatcattgagaaagataatagctccatctggtttggatttgag 546720  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 71 - 201
Target Start/End: Complemental strand, 1600431 - 1600301
Alignment:
Q  71 gttgtgataaagtgcatgctagagttgttgactcaatggtattttcaaggccatcattgagaaagataacagcgccacctggttttcatttgagtgacga 170  Q
    ||||| || ||||| ||||||  ||||||| ||| |||||| ||| ||||||||| |||||||||||| |||| ||||||| ||||| ||||||||||||    
T  1600431 gttgtcatgaagtgaatgctaaggttgttgtctcgatggtacttttaaggccatccttgagaaagatagcagctccacctgattttcctttgagtgacga 1600332  T
Q  171 aaagaagaaactcttcttgcgtcaaggatgc 201  Q
    ||| | |||| |||||| | |||| ||||||    
T  1600331 aaataggaaattcttctcgagtcatggatgc 1600301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 139
Target Start/End: Original strand, 1524643 - 1524750
Alignment:
Q  32 tagaaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatgctagagttgttgactcaatggtattttcaaggccatcattgag 131  Q
    ||||||||||||||||||| |||||||| || ||||  ||||||  |||||| ||||||||  |||||| ||||||| |||| ||||| |||||||||||    
T  1524643 tagaaaactgcacacaactgagagagattaatttgaggggttgttgtaaagttcatgctagctttgttgcctcaatgctattatcaagaccatcattgag 1524742  T
Q  132 aaagataa 139  Q
    | ||||||    
T  1524743 agagataa 1524750  T

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Target: chr4; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 35 - 133
Target Start/End: Complemental strand, 1545709 - 1545611
Alignment:
Q  35 aaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatgctagagttgttgactcaatggtattttcaaggccatcattgagaa 133  Q
    ||||||||||||||||||||| |||||| ||||  ||||||||||||||||||||||  ||| |||  | | | ||||| |||||||||||||||||||    
T  1545709 aaaactgcacacaactaagagtgatcaatttgaggggttgtgataaagtgcatgctaatgttattgctttattagtattatcaaggccatcattgagaa 1545611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 140
Target Start/End: Original strand, 1552944 - 1553038
Alignment:
Q  46 caactaagagagatcaacttgaacggttgtgataaagtgcatgctagagttgttgactcaatggtattttcaaggccatcattgagaaagataac 140  Q
    ||||||||||||||||| ||||| ||||||  ||||||| ||  |   |||||||  ||| ||||||||||||||||||||||||||||||||||    
T  1552944 caactaagagagatcaatttgaaaggttgtcttaaagtggatcatgatgttgttgcttcattggtattttcaaggccatcattgagaaagataac 1553038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 566142 - 566073
Alignment:
Q  18 agtgaaacacgtgttagaaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcat 87  Q
    |||||||||| || | ||||||||||||||||| ||||| ||||| ||| | |||||| |||||||||||    
T  566142 agtgaaacacctggtggaaaactgcacacaactgagagaaatcaagttggagggttgttataaagtgcat 566073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 570303 - 570182
Alignment:
Q  19 gtgaaacacgtgttagaaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatgctagagttgttgactcaatggtattttcaa 118  Q
    ||||| || ||| ||||||||||||||||||| || |||||||| |||||    ||  |||||||||||   |   |||||||||| ||| |||| ||||    
T  570303 gtgaatcatgtggtagaaaactgcacacaactgagggagatcaatttgaagaactgctataaagtgcataaaaatattgttgactcgatgatattatcaa 570204  T
Q  119 ggccatcattgagaaagataac 140  Q
    | ||||||||||||||||||||    
T  570203 gaccatcattgagaaagataac 570182  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 370796 - 370760
Alignment:
Q  102 ctcaatggtattttcaaggccatcattgagaaagata 138  Q
    ||||||||||||||||||||||||||| |||||||||    
T  370796 ctcaatggtattttcaaggccatcattcagaaagata 370760  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 1548659 - 1548763
Alignment:
Q  107 tggtattttcaaggccatcattgagaaagataacagcgccacctggttttcatttgagtgacgaaaagaagaaactcttcttgcgtcaaggatgcattgt 206  Q
    ||||||||||||| ||||||||||||||||||||| | ||| ||  || |||||| ||||||    ||| | ||||||||| || |||||||||  ||||    
T  1548659 tggtattttcaagaccatcattgagaaagataacaactccagctctttgtcattttagtgacactgagatggaactcttctcgcatcaaggatgtcttgt 1548758  T
Q  207 ttgct 211  Q
    |||||    
T  1548759 ttgct 1548763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 7226106 - 7226150
Alignment:
Q  95 ttgttgactcaatggtattttcaaggccatcattgagaaagataa 139  Q
    |||||| ||||||||| | ||||||||||||||||||||||||||    
T  7226106 ttgttgcctcaatggtttcttcaaggccatcattgagaaagataa 7226150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 211
Target Start/End: Original strand, 1528363 - 1528542
Alignment:
Q  32 tagaaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatgctagagttgttgactcaatggtattttcaaggccatcattgag 131  Q
    ||||||||||||||||||| |||||||| || ||| | ||||||  |||||||  ||||   |||||| | ||||||||||||  |||| | ||| | ||    
T  1528363 tagaaaactgcacacaactgagagagataaatttgcagggttgttgtaaagtggttgctgatgttgttaaatcaatggtatttataaggtcgtcacttag 1528462  T
Q  132 aaagataacagcgccacctggttttcatttgagtgacgaaaagaagaaactcttcttgcgtcaaggatgcattgtttgct 211  Q
    |||||||   || || ||| |||||||||  ||||||  ||||  |||| |  |||||||||| |||||| |||||||||    
T  1528463 aaagatagtggctccgccttgttttcattgtagtgacagaaagcggaaatttatcttgcgtcatggatgccttgtttgct 1528542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 3438797 - 3438852
Alignment:
Q  106 atggtattttcaaggccatcattgagaaagataacagcgccacctggttttcattt 161  Q
    ||||||||||||| |||||||||||||||| |||| || |||||| ||| ||||||    
T  3438797 atggtattttcaaagccatcattgagaaaggtaactgctccacctcgttatcattt 3438852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 1489507 - 1489624
Alignment:
Q  18 agtgaaacacgtgttagaaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatgctagagttgttgactcaatggtattttca 117  Q
    |||||| || ||| ||||||| ||| ||||||||||||||||||| |||||    |||| | ||||||||| |   ||| ||| |||| || ||||||||    
T  1489507 agtgaagcatgtgctagaaaaatgcgcacaactaagagagatcaatttgaaaatgtgtggtcaagtgcatgatgatgttcttgcctcattgatattttca 1489606  T
Q  118 aggccatcattgagaaag 135  Q
    |||||||| || ||||||    
T  1489607 aggccatcgttaagaaag 1489624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 8187313 - 8187358
Alignment:
Q  94 gttgttgactcaatggtattttcaaggccatcattgagaaagataa 139  Q
    ||||||||||| ||| ||||||||||||||||  ||||||||||||    
T  8187313 gttgttgactcgatgatattttcaaggccatcgctgagaaagataa 8187358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 659584 - 659540
Alignment:
Q  95 ttgttgactcaatggtattttcaaggccatcattgagaaagataa 139  Q
    |||||| ||| |||||||||||||||||||| |||| ||||||||    
T  659584 ttgttgcctcgatggtattttcaaggccatcgttgaaaaagataa 659540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 1508163 - 1508199
Alignment:
Q  32 tagaaaactgcacacaactaagagagatcaacttgaa 68  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  1508163 tagaaaaatgcacacaactaagagagatcaatttgaa 1508199  T

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Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 43634132 - 43633964
Alignment:
Q  18 agtgaaacacgtgttagaaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatgctagagttgttgactcaatggtattttca 117  Q
    |||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||    
T  43634132 agtgaagcacgtgttagaaaattgcagacaactaagagagatcaacttgaacggttgtgataaagt------------------ctcaatggtattttca 43634051  T
Q  118 aggccatcattgagaaagataacagcgccacctggttttcatttgagtgacgaaaagaagaaactcttcttgcgtcaaggatgcatt 204  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  43634050 aggccatcattgagaaagataatagcgccacctcgttttcatttgagtgacaaaaagaagaaactcttcttgcatcaaggatgcatt 43633964  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 282 - 328
Target Start/End: Original strand, 43995816 - 43995862
Alignment:
Q  282 aaataaaaaattatcatagaatcgtatatttaaaactatccgcatat 328  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||    
T  43995816 aaataaaaaatcatcatacaatcgtatatttaaaactatccgcatat 43995862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 211
Target Start/End: Complemental strand, 9581008 - 9580840
Alignment:
Q  32 tagaaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatgctagagttgttgactcaatggtattttcaaggccatcattgag 131  Q
    ||||||| |||||||||||   ||||||  | ||||  |||||| |||||||||||  ||| || |||   |||||||||| |||||||||||| |||||    
T  9581008 tagaaaattgcacacaactggaagagattgatttgaggggttgttataaagtgcatcgtagtgtggtttcgtcaatggtatcttcaaggccatcgttgag 9580909  T
Q  132 aaagataacagcgccacctggttttcatttgagtgacgaaaagaagaaactcttcttgcgtcaaggatgcattgtttgct 211  Q
    |||||||| |||            | |||||||||||  |||||||||| |||||| | |||||||||||||||||||||    
T  9580908 aaagataatagc-----------attatttgagtgacagaaagaagaaaatcttctcgtgtcaaggatgcattgtttgct 9580840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 9586475 - 9586422
Alignment:
Q  158 atttgagtgacgaaaagaagaaactcttcttgcgtcaaggatgcattgtttgct 211  Q
    |||||||||||  ||||||||||| ||||| | |||||||||||||||||||||    
T  9586475 atttgagtgacagaaagaagaaacccttctcgtgtcaaggatgcattgtttgct 9586422  T

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Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 35 - 208
Target Start/End: Complemental strand, 32151237 - 32151064
Alignment:
Q  35 aaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatgctagagttgttgactcaatggtattttcaaggccatcattgagaaa 134  Q
    ||||||| | |||||| || |||||||| || |  ||||||||| |||||||||||    |||||||   ||||||||||||||||||||||||||||||    
T  32151237 aaaactgtatacaactgagggagatcaatttaaggggttgtgatcaagtgcatgctgatattgttgataaaatggtattttcaaggccatcattgagaaa 32151138  T
Q  135 gataacagcgccacctggttttcatttgagtgacgaaaagaagaaactcttcttgcgtcaaggatgcattgttt 208  Q
    |||||| || |||||| ||| | |||| |||||| |||| | |||||||||||||||||| |||||| ||||||    
T  32151137 gataactgctccacctcgttatgatttcagtgacaaaaaaaggaaactcttcttgcgtcatggatgccttgttt 32151064  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 137
Target Start/End: Original strand, 5767820 - 5767920
Alignment:
Q  37 aactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatgctagagttgttgactcaatggtattttcaaggccatcattgagaaaga 136  Q
    |||||||||||||| |||||||| || ||| | || |||  ||| ||||| |||| |||||||| ||| |||||| ||||||||||||||||||||||||    
T  5767820 aactgcacacaactcagagagataaatttggatggctgtcctaatgtgcaagctaaagttgttgcctccatggtagtttcaaggccatcattgagaaaga 5767919  T
Q  137 t 137  Q
    |    
T  5767920 t 5767920  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 137
Target Start/End: Complemental strand, 14002987 - 14002887
Alignment:
Q  37 aactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatgctagagttgttgactcaatggtattttcaaggccatcattgagaaaga 136  Q
    |||||||| ||||| |||||||| |  ||||| || |||  ||| ||||| |||| |||||||| ||| |||||| ||||||||||||||||||||||||    
T  14002987 aactgcacgcaactcagagagataagtttgaatggctgtcctaatgtgcaagctaaagttgttgcctccatggtagtttcaaggccatcattgagaaaga 14002888  T
Q  137 t 137  Q
    |    
T  14002887 t 14002887  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 27922461 - 27922336
Alignment:
Q  18 agtgaaacacgtgttagaaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatgctagagttgttgactcaatggtattttca 117  Q
    |||||| || ||| ||||||||||||| ||||| ||| |||| |  ||| | |||||| ||||||| |||||||   |||||   || ||||||| ||||    
T  27922461 agtgaaccatgtggtagaaaactgcactcaactgagaaagattagtttggatggttgtcataaagtacatgctaatattgtttcttcgatggtatcttca 27922362  T
Q  118 aggccatcattgagaaagataacagc 143  Q
    |||||||| |||||| ||||||||||    
T  27922361 aggccatcgttgagacagataacagc 27922336  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 17628248 - 17628303
Alignment:
Q  106 atggtattttcaaggccatcattgagaaagataacagcgccacctggttttcattt 161  Q
    ||||||||| |||||||| |||||||||||||||  || |||||||||| ||||||    
T  17628248 atggtatttgcaaggccaacattgagaaagataattgccccacctggttatcattt 17628303  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 51113927 - 51114065
Alignment:
Q  18 agtgaaacacgtgttagaaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatgctagagttgttgactcaatggtattttca 117  Q
    |||||| || ||| ||||||| |||||| ||||||||||||| || || || ||||||  ||||||||||||||   |||||| ||||||| ||||||||    
T  51113927 agtgaagcatgtggtagaaaaatgcacaaaactaagagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcctcaatgatattttca 51114026  T
Q  118 aggccatcattgagaaagataacagcgccacctggtttt 156  Q
    ||||||||||||||| | |||||||| ||||||||||||    
T  51114027 aggccatcattgagagaaataacagctccacctggtttt 51114065  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 35 - 138
Target Start/End: Original strand, 514891 - 514994
Alignment:
Q  35 aaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatgctagagttgttgactcaatggtattttcaaggccatcattgagaaa 134  Q
    |||||||||||| ||| ||||||||||| || |  |||||| |||||||||||  ||  ||||||| | |||||||||||||||||||||||||||||||    
T  514891 aaaactgcacacgactgagagagatcaatttaagaggttgtaataaagtgcattataatgttgttgccccaatggtattttcaaggccatcattgagaaa 514990  T
Q  135 gata 138  Q
    ||||    
T  514991 gata 514994  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 51121039 - 51121159
Alignment:
Q  18 agtgaaacacgtgttagaaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatgctagagttgttgactcaatggtattttca 117  Q
    ||||||||| ||| ||||||||||||||||| | |||| |||||||||||    |||  ||||||| ||||||    |||||| |||||| || ||||||    
T  51121039 agtgaaacatgtggtagaaaactgcacacaattgagagtgatcaacttgaggtattgctataaagtccatgctgattttgttgcctcaatagtcttttca 51121138  T
Q  118 aggccatcattgagaaagata 138  Q
    ||| |||| ||||||||||||    
T  51121139 aggtcatcgttgagaaagata 51121159  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 208
Target Start/End: Complemental strand, 9411245 - 9411118
Alignment:
Q  81 agtgcatgctagagttgttgactcaatggtattttcaaggccatcattgagaaagataacagcgccacctggttttcatttgagtgacgaaaagaagaaa 180  Q
    |||||||||||   ||||||||   ||||||||||||||||| |||||||| ||||||| | | |||||||||||| ||||| ||  | |||| |   ||    
T  9411245 agtgcatgctaatattgttgacgatatggtattttcaaggccgtcattgagcaagataaaaactccacctggttttgatttgtgttccaaaaatagagaa 9411146  T
Q  181 ctcttcttgcgtcaaggatgcattgttt 208  Q
    |||||||||||| | |||||| ||||||    
T  9411145 ctcttcttgcgtaatggatgccttgttt 9411118  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 6426463 - 6426420
Alignment:
Q  19 gtgaaacacgtgttagaaaactgcacacaactaagagagatcaa 62  Q
    |||||||| ||| ||||||||||||||||||||||| |||||||    
T  6426463 gtgaaacaagtggtagaaaactgcacacaactaagaaagatcaa 6426420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 28935002 - 28934884
Alignment:
Q  18 agtgaaacacgtgttagaaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatgctagagttgttgactcaatggtattttca 117  Q
    |||||| || ||| ||||||| ||||||||||||||||||||| | ||| | | ||||| |||||||||| |||   | || | |||| | |||||  ||    
T  28935002 agtgaagcatgtggtagaaaattgcacacaactaagagagatctatttggatgattgtgttaaagtgcatcctaatttggtagcctcactagtattacca 28934903  T
Q  118 aggccatcattgagaaaga 136  Q
    ||| |||||||||||||||    
T  28934902 aggtcatcattgagaaaga 28934884  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 45245231 - 45245352
Alignment:
Q  18 agtgaaacacgtgttagaaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatgctagagttgttgactcaatggtattttca 117  Q
    ||||||||| ||| ||||||| ||||||||||| | ||||||||| ||||     ||   | ||||||||||||  ||| ||| ||| ||||||||||||    
T  45245231 agtgaaacatgtggtagaaaattgcacacaacttacagagatcaatttgaggcactgctttcaagtgcatgctaatgttattgtctcgatggtattttca 45245330  T
Q  118 aggccatcattgagaaagataa 139  Q
    |||||||| |||| ||||||||    
T  45245331 aggccatcgttgaaaaagataa 45245352  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 41889720 - 41889828
Alignment:
Q  31 ttagaaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatgctagagttgttgactcaatggtattttcaaggccatcattga 130  Q
    ||||| |||||||| ||||| |||  |||||  ||| | |||||| |||||||  ||| ||  ||||| | ||||||||||| ||||||||  |||||||    
T  41889720 ttagagaactgcacgcaactgagaatgatcagtttggatggttgtcataaagtaaatggtaatgttgtggcctcaatggtatcttcaaggctgtcattga 41889819  T
Q  131 gaaagataa 139  Q
    |||||||||    
T  41889820 gaaagataa 41889828  T

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