View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8574_low_5 (Length: 301)

Name: NF8574_low_5
Description: NF8574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8574_low_5
NF8574_low_5
[»] chr7 (12 HSPs)
chr7 (19-285)||(29578170-29578436)
chr7 (19-285)||(29582339-29582605)
chr7 (30-79)||(8537454-8537503)
chr7 (162-283)||(8609464-8609585)
chr7 (237-285)||(27846604-27846652)
chr7 (231-285)||(27831373-27831427)
chr7 (26-79)||(8383577-8383630)
chr7 (32-79)||(8601394-8601441)
chr7 (200-274)||(8575911-8575985)
chr7 (26-79)||(8569725-8569778)
chr7 (143-184)||(17259764-17259805)
chr7 (143-184)||(17267467-17267508)
[»] chr2 (1 HSPs)
chr2 (160-285)||(43624957-43625082)


Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 29578436 - 29578170
Alignment:
Q  19 agagacgaaacaaacccaacaagttgttctcactggcttttattctctcaccctcataaacatggatggatacaccaagttggttatctacacttgtctt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29578436 agagacgaaacaaacccaacaagttgttctcactggcttttattctctcaccctcataaacatggatggatacaccaagttggttatctacacttgtctt 29578337  T
Q  119 acatctatcctcagtcatcttaataggaattggagtgttcttaggaatcactacactcatgacatctccttttgtccatataccaagcgacaagggtgta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29578336 acatctatcctcagtcatcttaataggaattggagtgttcttaggaatcactacactcatgacatctccttttgtccatataccaagcgacaagggtgta 29578237  T
Q  219 atatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctg 285  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29578236 atatctcgcaagaccaaatttggaacattcttaatgccatcaatcaacaaagcagcctgcacagctg 29578170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 29582605 - 29582339
Alignment:
Q  19 agagacgaaacaaacccaacaagttgttctcactggcttttattctctcaccctcataaacatggatggatacaccaagttggttatctacacttgtctt 118  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  || || ||||||| |||||||||||||||||||||    
T  29582605 agagactaaacaaacccagcaagttgttctcactggcttttattctctcaccctcataaacattaattgagacaccaaattggttatctacacttgtctt 29582506  T
Q  119 acatctatcctcagtcatcttaataggaattggagtgttcttaggaatcactacactcatgacatctccttttgtccatataccaagcgacaagggtgta 218  Q
    |||||| || || ||||||||   |||||| ||||||||| |||||||||| |||||||||| ||||||||||||  |||||||||| ||||||||||||    
T  29582505 acatctttcttctgtcatcttggcaggaatgggagtgttcctaggaatcaccacactcatgatatctccttttgttgatataccaagtgacaagggtgta 29582406  T
Q  219 atatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctg 285  Q
    ||||||  |||||  |||| |||||||||||  ||||| ||||||| ||||||||||||||||||||    
T  29582405 atatcttgcaagataaaatctggaacattctcaatgccttcaatcagcaaagcagcctgcacagctg 29582339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 8537454 - 8537503
Alignment:
Q  30 aaacccaacaagttgttctcactggcttttattctctcaccctcataaac 79  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8537454 aaacccaacaagttgttctcactggctttcattctctcaccctcataaac 8537503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 283
Target Start/End: Original strand, 8609464 - 8609585
Alignment:
Q  162 ggaatcactacactcatgacatctccttttgtccatataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaa 261  Q
    ||||||| ||||||||| |||||||||||| || |||||||||| ||||| ||||||| ||||| ||  ||||| ||||||||    |||||||| |||     
T  8609464 ggaatcaatacactcatcacatctccttttatcgatataccaagtgacaaaggtgtaacatctcgcagcaccaagtttggaactgatttgatgccttcac 8609563  T
Q  262 tcaacaaagcagcctgcacagc 283  Q
     ||||||||||||||| |||||    
T  8609564 ccaacaaagcagcctggacagc 8609585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 237 - 285
Target Start/End: Complemental strand, 27846652 - 27846604
Alignment:
Q  237 tttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctg 285  Q
    |||||||||||||| ||| ||||| ||||||||||||||||||||||||    
T  27846652 tttggaacattcttaatgtcatcactcaacaaagcagcctgcacagctg 27846604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 27831427 - 27831373
Alignment:
Q  231 accaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctg 285  Q
    ||||| |||||||||||| | ||| ||||| ||||||||||||||||||||||||    
T  27831427 accaagtttggaacattcataatgtcatcactcaacaaagcagcctgcacagctg 27831373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 8383630 - 8383577
Alignment:
Q  26 aaacaaacccaacaagttgttctcactggcttttattctctcaccctcataaac 79  Q
    ||||||||| ||||||||||||||| | ||||| | ||||||||||||||||||    
T  8383630 aaacaaacctaacaagttgttctcattagctttcaatctctcaccctcataaac 8383577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 8601394 - 8601441
Alignment:
Q  32 acccaacaagttgttctcactggcttttattctctcaccctcataaac 79  Q
    ||||||||||||||||||||| ||||||| |||||| || ||||||||    
T  8601394 acccaacaagttgttctcacttgcttttaatctctcgccttcataaac 8601441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 274
Target Start/End: Original strand, 8575911 - 8575985
Alignment:
Q  200 accaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagc 274  Q
    ||||| |||||| ||||||| |||||  || ||||| ||||||||||||||  |||| ||| |||||||||||||    
T  8575911 accaaacgacaacggtgtaacatctcgtaacaccaagtttggaacattcttactgccttcactcaacaaagcagc 8575985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 8569725 - 8569778
Alignment:
Q  26 aaacaaacccaacaagttgttctcactggcttttattctctcaccctcataaac 79  Q
    ||||||||| | ||||||||| |||||  |||||| ||||||||||||||||||    
T  8569725 aaacaaaccaagcaagttgttgtcactatcttttaatctctcaccctcataaac 8569778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 17259764 - 17259805
Alignment:
Q  143 aggaattggagtgttcttaggaatcactacactcatgacatc 184  Q
    |||||||| ||||||| |||||||||| ||||||||||||||    
T  17259764 aggaattgaagtgttcctaggaatcaccacactcatgacatc 17259805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 17267467 - 17267508
Alignment:
Q  143 aggaattggagtgttcttaggaatcactacactcatgacatc 184  Q
    |||||||| ||||||| |||||||||| ||||||||||||||    
T  17267467 aggaattgaagtgttcctaggaatcaccacactcatgacatc 17267508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 285
Target Start/End: Original strand, 43624957 - 43625082
Alignment:
Q  160 taggaatcactacactcatgacatctccttttgtccatataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatc 259  Q
    |||||||||| |||||||||||| |||| ||  |  | |||||||| ||||| || |||| ||||| ||  ||||| |||||||||||||| ||||| |     
T  43624957 taggaatcaccacactcatgacacctcccttgtttaagataccaagtgacaaaggggtaacatctcgcagcaccaattttggaacattcttaatgccttt 43625056  T
Q  260 aatcaacaaagcagcctgcacagctg 285  Q
    | |||| | ||||||||| |||||||    
T  43625057 actcaaaatagcagcctggacagctg 43625082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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