View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8574_low_9 (Length: 235)

Name: NF8574_low_9
Description: NF8574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8574_low_9
NF8574_low_9
[»] chr2 (2 HSPs)
chr2 (14-235)||(37797478-37797699)
chr2 (90-131)||(24992441-24992482)
[»] scaffold0163 (1 HSPs)
scaffold0163 (97-131)||(19288-19322)
[»] chr3 (2 HSPs)
chr3 (97-131)||(2158638-2158672)
chr3 (97-131)||(40090225-40090259)
[»] chr1 (1 HSPs)
chr1 (97-131)||(20174733-20174767)
[»] scaffold0500 (1 HSPs)
scaffold0500 (90-131)||(9329-9370)
[»] scaffold0096 (1 HSPs)
scaffold0096 (90-131)||(52403-52444)
[»] scaffold0028 (1 HSPs)
scaffold0028 (90-131)||(85209-85250)
[»] chr7 (1 HSPs)
chr7 (90-131)||(610120-610161)
[»] chr6 (2 HSPs)
chr6 (90-131)||(8998234-8998275)
chr6 (90-131)||(9007403-9007444)
[»] chr5 (1 HSPs)
chr5 (90-131)||(725055-725096)
[»] chr4 (1 HSPs)
chr4 (90-131)||(115536-115577)


Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 235
Target Start/End: Original strand, 37797478 - 37797699
Alignment:
Q  14 attttttctttctagctt-atacaactccattttattatggtgtcctgggagaggagaaatcatgnnnnnnnnngttttcaaaagatgaattttcaaact 112  Q
    |||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||    
T  37797478 atttttcctttctagctttatacaacttcattttattatggtgtcctgggagaggagaaatcatgaaaaaaaa-gttttcaaaagatgaattttcaaact 37797576  T
Q  113 ctcctccatgatcacttctaattattgcaattttcaaatctttttcaacttgtacttgtttgcaaaagatgacaaatattgagtataatccgtccttgtt 212  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  37797577 ctcctccatgatcacttctaactattgcaattttcaaatctttttcaacttgcacttgtttgcaaaagatgacaaatattgagtataatccgtccttgtt 37797676  T
Q  213 tctaaggtattttatgtaggaac 235  Q
    |||||||||||||||||||||||    
T  37797677 tctaaggtattttatgtaggaac 37797699  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 24992482 - 24992441
Alignment:
Q  90 ttcaaaagatgaattttcaaactctcctccatgatcacttct 131  Q
    ||||||||| | ||||||||| ||||||||||||||||||||    
T  24992482 ttcaaaagaggcattttcaaattctcctccatgatcacttct 24992441  T

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Target: scaffold0163 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 19322 - 19288
Alignment:
Q  97 gatgaattttcaaactctcctccatgatcacttct 131  Q
    |||||||||||||| ||||||||||||||||||||    
T  19322 gatgaattttcaaattctcctccatgatcacttct 19288  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 2158672 - 2158638
Alignment:
Q  97 gatgaattttcaaactctcctccatgatcacttct 131  Q
    |||||||||||||| ||||||||||||||||||||    
T  2158672 gatgaattttcaaattctcctccatgatcacttct 2158638  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Original strand, 40090225 - 40090259
Alignment:
Q  97 gatgaattttcaaactctcctccatgatcacttct 131  Q
    |||||||||||||| ||||||||||||||||||||    
T  40090225 gatgaattttcaaattctcctccatgatcacttct 40090259  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 20174767 - 20174733
Alignment:
Q  97 gatgaattttcaaactctcctccatgatcacttct 131  Q
    |||||||||||||| ||||||||||||||||||||    
T  20174767 gatgaattttcaaattctcctccatgatcacttct 20174733  T

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Target: scaffold0500 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 9370 - 9329
Alignment:
Q  90 ttcaaaagatgaattttcaaactctcctccatgatcacttct 131  Q
    ||||||||| | ||||||||| ||||||||||||||||||||    
T  9370 ttcaaaagaggcattttcaaattctcctccatgatcacttct 9329  T

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Target: scaffold0096 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 52444 - 52403
Alignment:
Q  90 ttcaaaagatgaattttcaaactctcctccatgatcacttct 131  Q
    ||||||||| | ||||||||| ||||||||||||||||||||    
T  52444 ttcaaaagaggcattttcaaattctcctccatgatcacttct 52403  T

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Target: scaffold0028 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 85250 - 85209
Alignment:
Q  90 ttcaaaagatgaattttcaaactctcctccatgatcacttct 131  Q
    ||||||||| | ||||||||| ||||||||||||||||||||    
T  85250 ttcaaaagaggcattttcaaattctcctccatgatcacttct 85209  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 610161 - 610120
Alignment:
Q  90 ttcaaaagatgaattttcaaactctcctccatgatcacttct 131  Q
    ||||||||| | ||||||||| ||||||||||||||||||||    
T  610161 ttcaaaagaggcattttcaaattctcctccatgatcacttct 610120  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 8998275 - 8998234
Alignment:
Q  90 ttcaaaagatgaattttcaaactctcctccatgatcacttct 131  Q
    ||||||||| | ||||||||| ||||||||||||||||||||    
T  8998275 ttcaaaagaggcattttcaaattctcctccatgatcacttct 8998234  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 9007444 - 9007403
Alignment:
Q  90 ttcaaaagatgaattttcaaactctcctccatgatcacttct 131  Q
    ||||||||| | ||||||||| ||||||||||||||||||||    
T  9007444 ttcaaaagaggcattttcaaattctcctccatgatcacttct 9007403  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 725055 - 725096
Alignment:
Q  90 ttcaaaagatgaattttcaaactctcctccatgatcacttct 131  Q
    ||||||||| | ||||||||| ||||||||||||||||||||    
T  725055 ttcaaaagaggcattttcaaattctcctccatgatcacttct 725096  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 115577 - 115536
Alignment:
Q  90 ttcaaaagatgaattttcaaactctcctccatgatcacttct 131  Q
    ||||||||| | ||||||||| ||||||||||||||||||||    
T  115577 ttcaaaagaggcattttcaaattctcctccatgatcacttct 115536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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