View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8575_high_1 (Length: 489)
Name: NF8575_high_1
Description: NF8575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8575_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 12 - 451
Target Start/End: Original strand, 53248960 - 53249395
Alignment:
| Q |
12 |
aagaagaggcggatgagaaagcataaaaaagtggttaaaataagtaacttttcttgtgagtcttttctatacttacagatagggatgagaataagtcagg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
53248960 |
aagaagaggcggatgagaaagcataaaaaagtggttaaaataagtaacttttcttgttagtcttttctatacttacaggtagggatgagaataagtcagg |
53249059 |
T |
|
| Q |
112 |
ctaaccgacaagggtgattgtaatatcaaaatggaggtcaaccttgttcgtctattagcgcattagtttgtttagatatagataatattgcttatttaaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53249060 |
ctaaccgacaagggtgattgtaatatcaaaatggagttcaatcttgttcttctattagcgcattagtttgtttagatatagataatattgcttatttaaa |
53249159 |
T |
|
| Q |
212 |
tatgttcataaaataattgcagactcaagcctaaatttaagtttctgactatgacagactacagatcagtcctatgccttgaagtgttagtccaagccat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53249160 |
tatgttcataaaataattgcagactcaagcctaaatttaagtttatgactatgacagactacagatcagtcctatgccttgaagtgttagtccaagccat |
53249259 |
T |
|
| Q |
312 |
gtttggtatttgtaaagtctaggtcggtcagtcggtccagcctattcctatccttacttacatagaaagtataaaacctgattacacattaaccaagtat |
411 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53249260 |
gtttggtgtttgtaaagtctaggtcg----gtcggtccagcctattcctatccttacttacatagaaagtataaaacctgattacacattaaccaagtat |
53249355 |
T |
|
| Q |
412 |
agtactaaatgcaatacaataaggcaacatacaatcccgt |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53249356 |
agtactaaatgcaatacaataaggcaacatacaatcccgt |
53249395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University