View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8575_high_15 (Length: 243)
Name: NF8575_high_15
Description: NF8575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8575_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 35971189 - 35971326
Alignment:
| Q |
1 |
tggtccttctgcgcgacttaacttccccgataccgcagattatagttcattaaggaataattgaaggattcttcattggcttctgctagctgctgttctt |
100 |
Q |
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| T |
35971189 |
tggtccttctgcgcgacttaacttccccgataccgcagattatagttcattaaggaatatttgaaggattcttcattggcttctactagctgctgttctt |
35971288 |
T |
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| Q |
101 |
cggtagtaacaactcctgtaaaatttgagacaacagct |
138 |
Q |
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| T |
35971289 |
cggtagtaacaactcctgtaaaatctgagacaacagct |
35971326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 35971586 - 35971690
Alignment:
| Q |
137 |
cttttgggccatacagataa---taataatacaattggtgaatttggagggatgcaaagtttgaattagattcttaaaaattgatttggataatgatgtc |
233 |
Q |
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| T |
35971586 |
cttttgggccatacagataataataataatacaattggtgaatttggagggatgcaaagtttgaattagattcttaaaaattgatttggataatgatgtg |
35971685 |
T |
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| Q |
234 |
catct |
238 |
Q |
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||||| |
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| T |
35971686 |
catct |
35971690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 35978447 - 35978312
Alignment:
| Q |
1 |
tggtccttctgcgcgacttaacttccccgataccgcagattatagttc-attaaggaataattgaaggattcttcattggcttctgctagctgctgttct |
99 |
Q |
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|||||||||||||||||||||||| || |||| | |||||||||| || ||| ||||||| ||||||||||||||| || |||||||||| |||||| |
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| T |
35978447 |
tggtccttctgcgcgacttaactttcctgatatctcagattatagatctattcaggaatatttgaaggattcttcagcagcagctgctagctgttgttct |
35978348 |
T |
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| Q |
100 |
tcggtagtaacaactcctgtaaaatttgagacaaca |
135 |
Q |
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| T |
35978347 |
tcggtggcaacaacgcctgcgacatctgagacaaca |
35978312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 35975422 - 35975333
Alignment:
| Q |
1 |
tggtccttctgcgcgacttaacttccccgataccgcagattatagttc-attaaggaataattgaaggattcttcattggcttctgctag |
89 |
Q |
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|||| ||||||| ||||||||||| ||||||| | |||||||||| || |||||||||| |||| ||||||||||| |||| ||||||| |
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| T |
35975422 |
tggtacttctgcacgacttaacttgcccgatatctcagattatagctctgttaaggaatatttgatggattcttcatcggctgctgctag |
35975333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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