View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8575_high_16 (Length: 239)

Name: NF8575_high_16
Description: NF8575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8575_high_16
NF8575_high_16
[»] chr8 (2 HSPs)
chr8 (126-239)||(12521242-12521355)
chr8 (18-56)||(12521137-12521175)
[»] chr6 (2 HSPs)
chr6 (152-216)||(31974319-31974383)
chr6 (18-51)||(31974481-31974514)
[»] chr2 (1 HSPs)
chr2 (152-192)||(41700295-41700335)
[»] chr7 (1 HSPs)
chr7 (177-228)||(10234631-10234682)
[»] chr3 (1 HSPs)
chr3 (177-213)||(12881039-12881075)
[»] chr1 (1 HSPs)
chr1 (191-239)||(37627429-37627477)


Alignment Details
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 126 - 239
Target Start/End: Original strand, 12521242 - 12521355
Alignment:
Q  126 cattaccagcaatttttatttcaaactctttatcgctttgttttggttccttcatttacttttatgtcatttactttcatgtctttatcttataatcctt 225  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12521242 catttccagcaatttttatttcaaactctttatcgctttgttttcgttccttcatttacttttatgtcatttactttcatgtctttatcttataatcctt 12521341  T
Q  226 tgtatattatgatc 239  Q
    ||||||||||||||    
T  12521342 tgtatattatgatc 12521355  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 12521137 - 12521175
Alignment:
Q  18 acttgtaatcttactccaaagttgaaatcaagttcctat 56  Q
    |||||||||||||||||||||||||||||||||||||||    
T  12521137 acttgtaatcttactccaaagttgaaatcaagttcctat 12521175  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 31974383 - 31974319
Alignment:
Q  152 tctttatcgctttgttttggttccttcatttacttttatgtcatttactttcatgtctttatctt 216  Q
    ||||||||||||||||||  |||  |||||||||||||| ||||||||||| ||||||| |||||    
T  31974383 tctttatcgctttgttttcattctgtcatttacttttatatcatttacttttatgtcttcatctt 31974319  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 31974514 - 31974481
Alignment:
Q  18 acttgtaatcttactccaaagttgaaatcaagtt 51  Q
    |||||||||| |||||||||||||||||||||||    
T  31974514 acttgtaatcctactccaaagttgaaatcaagtt 31974481  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 41700335 - 41700295
Alignment:
Q  152 tctttatcgctttgttttggttccttcatttacttttatgt 192  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  41700335 tctttatcgctttgttttcattccttcatttacttttatgt 41700295  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 10234631 - 10234682
Alignment:
Q  177 tcatttacttttatgtcatttactttcatgtctttatcttataatcctttgt 228  Q
    ||||||||||||||||||||||||||||||  ||||| || |||||| ||||    
T  10234631 tcatttacttttatgtcatttactttcatgcatttattttctaatcccttgt 10234682  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 12881039 - 12881075
Alignment:
Q  177 tcatttacttttatgtcatttactttcatgtctttat 213  Q
    ||||||||||||||| | |||||||||||||||||||    
T  12881039 tcatttacttttatgccttttactttcatgtctttat 12881075  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 37627429 - 37627477
Alignment:
Q  191 gtcatttactttcatgtctttatcttataatcctttgtatattatgatc 239  Q
    |||||||||||||||||||||||||| |||||  |||| || |||||||    
T  37627429 gtcatttactttcatgtctttatcttttaatctcttgtctactatgatc 37627477  T

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