View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8575_high_3 (Length: 445)
Name: NF8575_high_3
Description: NF8575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8575_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 10613205 - 10613432
Alignment:
| Q |
1 |
tgaagcaaaataaaaactgcta----catcagaaatttctccagccgcactgcagagttgtcactgaagcaccaaaataacacacccaaaaacaaccctt |
96 |
Q |
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| T |
10613205 |
tgaagcaaaataaaaactgctggctgcatcagaaatttctccagccgcactgcagagttgtcactgaagcaccaaaataacacacccaaaaacaaccctt |
10613304 |
T |
|
| Q |
97 |
ccaaatcgaaggaagatgtactaaaagccgcaaacacaagaaacaatctgctaaaaacatatcaaaatcaatttagaatttgttttaaagtttgatataa |
196 |
Q |
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| T |
10613305 |
ccaaatcgaaggaagatgtactaaaagccgcaaacacaagaaacaatctgctaaaaacatatcaaaatcaatttagaatttgttttaaaatttgata-aa |
10613403 |
T |
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| Q |
197 |
gagaagaagagtaagatgtatatgtcaat |
225 |
Q |
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| T |
10613404 |
gagaagaagagtaagatgtatatgtcaat |
10613432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 10612211 - 10612154
Alignment:
| Q |
135 |
agaaacaatctgctaaaaacatatcaaaatcaatttagaatttgttttaaagtttgat |
192 |
Q |
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| T |
10612211 |
agaaacaatctgctaaaaacagatcaaaatcaattttgaatttgttttaaaatttgat |
10612154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 8e-28; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 38 - 257
Target Start/End: Original strand, 6422411 - 6422624
Alignment:
| Q |
38 |
cagccgcactgcagagttgtcactgaagcaccaaaataacacacccaaaaacaacccttccaaatcgaaggaagatgtactaaaagccgcaaacacaaga |
137 |
Q |
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| T |
6422411 |
cagctgcactgcaaagtgatcaccgaagcaccgaaagaactcacccaaaaacatcccttccaaaacgagcgcagat--acaaaaagccgtcaacagaaga |
6422508 |
T |
|
| Q |
138 |
aacaatctgctaaaaacatatcaaaatcaatttagaatttgttttaaagtttgatataagagaagaagagtaagatgtatatgtcaatactaaagggctt |
237 |
Q |
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| T |
6422509 |
aacaatctgctaaaaacagatcaaaatgaatttagaatttgtattaaaatttgata----aaaagaataataacatgtatctgccaatattgaagggctt |
6422604 |
T |
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| Q |
238 |
acatatttctacggaacaaa |
257 |
Q |
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| T |
6422605 |
gcatatgtctacagaacaaa |
6422624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 7118616 - 7118703
Alignment:
| Q |
94 |
cttccaaatcgaaggaagatgtactaaaagccgcaaacacaagaaacaatctgctaaaaacatatcaaaatcaatttagaatttgtttta |
183 |
Q |
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| T |
7118616 |
cttccaaaatgaaggaagat--actaaaagccgccaacacaagaaacaatctgctaaaaacagttaaaaatctatttagaatttgtttta |
7118703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 7131094 - 7131181
Alignment:
| Q |
94 |
cttccaaatcgaaggaagatgtactaaaagccgcaaacacaagaaacaatctgctaaaaacatatcaaaatcaatttagaatttgtttta |
183 |
Q |
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|||||||| |||||||||| ||||||| |||| ||||||||||||||||||||||||||| | |||||| ||||||||||||||||| |
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| T |
7131094 |
cttccaaaatgaaggaagat--actaaaacccgccaacacaagaaacaatctgctaaaaacagttaaaaatctatttagaatttgtttta |
7131181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 6402361 - 6402426
Alignment:
| Q |
137 |
aaacaatctgctaaaaacatatcaaaatcaatttagaatttgttttaaagtttgatataagagaaga |
203 |
Q |
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| T |
6402361 |
aaacaatctgttaaaaacagatcaaagtcaatttagaatttgtattaaaatttgata-aagagaaga |
6402426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 7118725 - 7118774
Alignment:
| Q |
267 |
tcaattaggcatttgtcaggaggaaacttatggactcccattctagaata |
316 |
Q |
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|||||||||||||||||||||| ||||||| |||||||| |||||||||| |
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| T |
7118725 |
tcaattaggcatttgtcaggagcaaacttaaggactcccgttctagaata |
7118774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 7131203 - 7131252
Alignment:
| Q |
267 |
tcaattaggcatttgtcaggaggaaacttatggactcccattctagaata |
316 |
Q |
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|||||||||||||||||||||| ||||||| |||||||| |||||||||| |
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| T |
7131203 |
tcaattaggcatttgtcaggagcaaacttaaggactcccgttctagaata |
7131252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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