View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8575_high_4 (Length: 404)
Name: NF8575_high_4
Description: NF8575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8575_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 6586558 - 6586179
Alignment:
| Q |
1 |
acacatcatggtggttgattgtcattggtcaacttttgtacattttcatcaccaaatcagatggtgcttggagtggattctcatggctagcttttgcaga |
100 |
Q |
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| T |
6586558 |
acacatcatggtggttgattgtcattggtcaacttttgtacattttcatcaccaaatcagatggtgcttggagtggattctcatggctagcttttgcaga |
6586459 |
T |
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| Q |
101 |
tttgtttaattttttgaaactttctttagcttcagctgttatgttatggtatattttcacaaacttcatattttcaattcgacttaattaatatttgaat |
200 |
Q |
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| T |
6586458 |
tttgtttaattttttgaaactttctttagcttcagctgttatgttatggtatattttcacaaacttcatattttcaattcgacttaattaatatttgaat |
6586359 |
T |
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| Q |
201 |
ggaaactttatgttgaattgaattttgaaaatgtgatggcagcttggagttttggtacttgatgatattggtggtgataacagggcatttggcaaaccct |
300 |
Q |
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| T |
6586358 |
ggaaactttatgttgaattgaattttgaaaatgtgatggcagcttggagttttggtacttgatgatattggtggtgataacagggcatttggcaaaccct |
6586259 |
T |
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| Q |
301 |
ttggtgccattggatgctgtatctatttggtaaaagttctttagcatccctttctccaaattctcattgtgctgtataga |
380 |
Q |
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| T |
6586258 |
ttggtgccattggatgctgtatctatttggtaaaagttctttagcatccctttctccaaattctcattgtgctgtataga |
6586179 |
T |
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