View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8575_low_11 (Length: 368)
Name: NF8575_low_11
Description: NF8575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8575_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 39 - 359
Target Start/End: Complemental strand, 15288907 - 15288587
Alignment:
| Q |
39 |
gtgttgagacaaaaaatcaataggtgtcctttctcttcctaacatggctctctcataaagactcagtttttcttgccgacaacaccataaaacagtgatt |
138 |
Q |
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| T |
15288907 |
gtgtcgagacaaaaaatcaataggtgtcctttctcttcctaacatggctctctcataaagactcagtttttcttgccgacaacaccataaaacagtgatt |
15288808 |
T |
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| Q |
139 |
agaggcatgaaagaaagcttagaaagggtttgaaaatgggaagcacaaaccccttcaatgataatctttcctccttcaataagaaattttttcatttgac |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
15288807 |
agaggcatgaaagaaagcttagaaagggtttgaaaatgggaagcacaaaccccttcaatgataatctttcctccttcaataagaaattttttcatttaac |
15288708 |
T |
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| Q |
239 |
tctttattcgttgcttcccatatcccttctttgtttatacttgatccttttgtcccttactccttttgcaccaactaagcttcttcattctaccaccatt |
338 |
Q |
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||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15288707 |
tctttattcattgcttcccatatcccttctttgtatatacttgatccttttgtcccttactccttttgcaccaactaagcttcttcattctaccaccatt |
15288608 |
T |
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| Q |
339 |
tccacctaccactattcatct |
359 |
Q |
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||||||||||||||||||||| |
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| T |
15288607 |
tccacctaccactattcatct |
15288587 |
T |
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