View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8575_low_12 (Length: 365)
Name: NF8575_low_12
Description: NF8575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8575_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 139 - 351
Target Start/End: Original strand, 19910563 - 19910772
Alignment:
| Q |
139 |
ttatgaatgcataagcaggagatggaatttacttgttcctcacaatcttatcactttatgtatatcatgcaaactcataaattcaagtaaaatgcataag |
238 |
Q |
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| T |
19910563 |
ttatgaatgcataagcagtagctggaatttacttgttcctcacaatcttatcactttatgtataccatgcaaactcat---ttcaagtaaaatgcataag |
19910659 |
T |
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| Q |
239 |
cagtaccatgcaaacagagattggacaataagaattccaaaaggaaaatgctttatcccgtgaattctttcttcgcggaaaattcacgaatgcttttatt |
338 |
Q |
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| T |
19910660 |
cagtaccatgcaaacagagattggacaataagaattccaaaaggaaaatgctttatctcgcgaattctttcttcgcggaaaattcacgaatgcttttatt |
19910759 |
T |
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| Q |
339 |
aactatagaataa |
351 |
Q |
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| T |
19910760 |
aactatagaataa |
19910772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 19910432 - 19910491
Alignment:
| Q |
13 |
tccacacaggtttggcccgtacttcatacactttgtcatttattaggatttgtatgttgt |
72 |
Q |
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| T |
19910432 |
tccacacaggtttggcctgtacttcatacactttgtcatttgttaggatttgtatgttgt |
19910491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 284 - 336
Target Start/End: Original strand, 23602047 - 23602099
Alignment:
| Q |
284 |
aaatgctttatcccgtgaattctttcttcgcggaaaattcacgaatgctttta |
336 |
Q |
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| T |
23602047 |
aaatgctttatctcgcgaattcattcttcgcggaaaattcacaaatgctttta |
23602099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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