View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8575_low_14 (Length: 344)

Name: NF8575_low_14
Description: NF8575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8575_low_14
NF8575_low_14
[»] chr1 (10 HSPs)
chr1 (8-322)||(12992406-12992720)
chr1 (237-311)||(12914468-12914542)
chr1 (237-315)||(12956193-12956271)
chr1 (246-315)||(12942779-12942848)
chr1 (61-168)||(12885158-12885264)
chr1 (261-315)||(12921812-12921866)
chr1 (245-315)||(13000914-13000984)
chr1 (139-204)||(13000797-13000862)
chr1 (218-299)||(12885292-12885372)
chr1 (267-315)||(12950437-12950485)


Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 8 - 322
Target Start/End: Complemental strand, 12992720 - 12992406
Alignment:
Q  8 gagcagaacctgtgttcaaacaaaccaaactggagaggaactcataaaacattacaaacaatcatatagtaaaaatccaaaggttgatcatgatgttgct 107  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12992720 gagcagaaactatgttcaaacaaaccaaactggagaggaactcataaaacattacaaacaatcatatagtaaaaatccaaaggttgatcatgatgttgct 12992621  T
Q  108 tagattcaaatgaaacatagaagtttacaagaacaaaatacaaagcttaaaatcgtagagctaaacatctagcacttgaaagagcaaaacaaagaaaatg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12992620 tagattcaaatgaaacatagaagtttacaagaacaaaatacaaagcttaaaatcgtagagctaaacatctagcacttgaaagagcaaaacaaagaaaatg 12992521  T
Q  208 ttcaattaaatagtaccttaaagaacaatagaacaagcagctaagggattttttcctacaattgaaacatcaaacacaaacttgctctcatcaatcaact 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12992520 ttcaattaaatagtaccttaaagaacaatagaacaagcagctaagggattttttcctacaattgaaacatcaaacacaaacttgctctcatcaatcaact 12992421  T
Q  308 taaagagaagagtat 322  Q
    |||||||||||||||    
T  12992420 taaagagaagagtat 12992406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 311
Target Start/End: Original strand, 12914468 - 12914542
Alignment:
Q  237 agaacaagcagctaagggattttttcctacaattgaaacatcaaacacaaacttgctctcatcaatcaacttaaa 311  Q
    ||||||| ||||| | | ||| ||||||||||||||||||||||||||||| || ||||||||||| ||||||||    
T  12914468 agaacaaacagcttatgtattctttcctacaattgaaacatcaaacacaaatttcctctcatcaattaacttaaa 12914542  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 12956271 - 12956193
Alignment:
Q  237 agaacaagcagctaagggattttttcctacaattgaaacatcaaacacaaacttgctctcatcaatcaacttaaagaga 315  Q
    ||||||| ||||||| ||||| |||||| |||||||||||||||||||||| || |  |||||||||||||||| ||||    
T  12956271 agaacaaacagctaatggattctttcctgcaattgaaacatcaaacacaaattttcgttcatcaatcaacttaaggaga 12956193  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 246 - 315
Target Start/End: Complemental strand, 12942848 - 12942779
Alignment:
Q  246 agctaagggattttttcctacaattgaaacatcaaacacaaacttgctctcatcaatcaacttaaagaga 315  Q
    |||||| ||||| ||||| ||||||||||||||||||| |||  | ||||||||||||||||||||||||    
T  12942848 agctaatggattctttccaacaattgaaacatcaaacaaaaaaattctctcatcaatcaacttaaagaga 12942779  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 168
Target Start/End: Original strand, 12885158 - 12885264
Alignment:
Q  61 acaaacaatcatatagtaaaaatccaaaggttgatcatgatgttgcttagattcaaatgaaacatagaagtttacaagaacaaaatacaaagcttaaaat 160  Q
    ||||||||||||| || ||||||||||||| ||| ||||||  | ||||||||||||| ||||| ||| ||||| |  | |||||||||| |||||||||    
T  12885158 acaaacaatcatagagaaaaaatccaaaggctga-catgattctccttagattcaaatcaaacacagatgtttatagtaccaaaatacaatgcttaaaat 12885256  T
Q  161 cgtagagc 168  Q
     |||||||    
T  12885257 tgtagagc 12885264  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 315
Target Start/End: Original strand, 12921812 - 12921866
Alignment:
Q  261 tcctacaattgaaacatcaaacacaaacttgctctcatcaatcaacttaaagaga 315  Q
    ||||| || |||||||||||||||||| || ||||||||||| ||||||||||||    
T  12921812 tcctataactgaaacatcaaacacaaattttctctcatcaattaacttaaagaga 12921866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 315
Target Start/End: Original strand, 13000914 - 13000984
Alignment:
Q  245 cagctaagggattttttcctacaattgaaacatcaaacacaaacttgctctcatcaatcaacttaaagaga 315  Q
    ||||||| || || ||| ||||||||||||||| ||||||||| ||  |||||||||||||||| ||||||    
T  13000914 cagctaatgggttcttttctacaattgaaacattaaacacaaattttttctcatcaatcaacttcaagaga 13000984  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 13000797 - 13000862
Alignment:
Q  139 aacaaaatacaaagcttaaaatcgtagagctaaacatctagcacttgaaagagcaaaacaaagaaa 204  Q
    ||||||||||||||| |||||  |||||||||| ||| ||| |||| |||||| ||||||||||||    
T  13000797 aacaaaatacaaagcataaaaatgtagagctaagcatatagtacttaaaagagaaaaacaaagaaa 13000862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 299
Target Start/End: Original strand, 12885292 - 12885372
Alignment:
Q  218 tagtaccttaaagaacaatagaacaagcagctaagggattttttcctacaattgaaacatcaaacacaaacttgctctcatc 299  Q
    ||||| |||||||||||| | ||||| || |||| || || || |||| ||||||||||||||||||||| || ||||||||    
T  12885292 tagtatcttaaagaacaacacaacaaacaactaatgggttctt-cctataattgaaacatcaaacacaaattttctctcatc 12885372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 315
Target Start/End: Complemental strand, 12950485 - 12950437
Alignment:
Q  267 aattgaaacatcaaacacaaacttgctctcatcaatcaacttaaagaga 315  Q
    ||||||||||||||||||||| || || |||||||| ||| ||||||||    
T  12950485 aattgaaacatcaaacacaaatttcctttcatcaattaacctaaagaga 12950437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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