View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8575_low_17 (Length: 282)
Name: NF8575_low_17
Description: NF8575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8575_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 33 - 273
Target Start/End: Complemental strand, 35163759 - 35163519
Alignment:
| Q |
33 |
taaatcatatagaaggctctccaagaggttatatagactgaattgacagaactggaaatacaaaaaattatgaaaagaagaaaagcaaatagatattttt |
132 |
Q |
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| T |
35163759 |
taaatcatatagaaggctctccaagaggttatatagactgaattgacagaactggaaatacaaaaaattatgaaaagaagaaaagcaaatagatattttt |
35163660 |
T |
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| Q |
133 |
gttaggagttagctaacatccagactagccttatcccctttttcgttgaacaaaaaactcaattgatattcacatgaaatgtaaagtagctgagtgcaaa |
232 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35163659 |
gttaggagttagctaacatctagactagccttatcccctttttcgttgaacaaaaaactcaattgatattcacatgaaatgtaaagtagctaagtgcaaa |
35163560 |
T |
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| Q |
233 |
atggtagactacataatattccttctaagacaaagaattat |
273 |
Q |
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| T |
35163559 |
atggtagactacataatattccttctaagacaaagaattat |
35163519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 33 - 273
Target Start/End: Original strand, 44796424 - 44796664
Alignment:
| Q |
33 |
taaatcatatagaaggctctccaagaggttatatagactgaattgacagaactggaaatacaaaaaattatgaaaagaagaaaagcaaatagatattttt |
132 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44796424 |
taaatcatatagaaggttctccaagaggttatatagacagaattgacagaactggaaatacaaaaaattatgaaaagaagaaaagcaaatagatattttt |
44796523 |
T |
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| Q |
133 |
gttaggagttagctaacatccagactagccttatcccctttttcgttgaacaaaaaactcaattgatattcacatgaaatgtaaagtagctgagtgcaaa |
232 |
Q |
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| T |
44796524 |
gttaggagttagctaacatccagactagccttatcccctttttcgttgaacaaaaaactcaattgatattcaaatgaaatgtaaagtagctgagtgcaaa |
44796623 |
T |
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| Q |
233 |
atggtagactacataatattccttctaagacaaagaattat |
273 |
Q |
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| T |
44796624 |
atggtagactacataatattccttctaagacagagaattat |
44796664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 58 - 270
Target Start/End: Complemental strand, 39841863 - 39841651
Alignment:
| Q |
58 |
aggttatatagactgaattgacagaactggaaatacaaaaaattatgaaaagaagaaaagcaaatagatatttttgttaggagttagctaacatccagac |
157 |
Q |
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| T |
39841863 |
aggttatatagactgaattgacagaactggaaatacaaaaaattatgaaaagaagaaaagcaaatagatatttttgttaggagttagctaacatccagac |
39841764 |
T |
|
| Q |
158 |
tagccttatcccctttttcgttgaacaaaaaactcaattgatattcacatgaaatgtaaagtagctgagtgcaaaatggtagactacataatattccttc |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39841763 |
tagccttatcccctttttcgttgaacaaaaaactcaattgatattcacatgaaatgtaaagtagctgagtgcaaaatggtagactaaataatattccttc |
39841664 |
T |
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| Q |
258 |
taagacaaagaat |
270 |
Q |
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||||||||||||| |
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| T |
39841663 |
taagacaaagaat |
39841651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 39846967 - 39846701
Alignment:
| Q |
17 |
aaatgagcatatatgctaaatcatatagaaggctctccaaga-----------ggttatatagactgaattgacagaactggaaatacaaaaaattatga |
105 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39846967 |
aaatgagcatatctgctaaatcatatagaaggctctccaagaatcaaggtaaaggttataaagactgaattgacagaactggaaatacaaaaaattatga |
39846868 |
T |
|
| Q |
106 |
aaagaagaaaagcaaatagatatttttgttaggagttagctaacatccagactagccttatcccctttttcgttgaacaaaaaactcaattgatattcac |
205 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39846867 |
aaagaagaaaagcaaatagatatttt-gttaggagttagctaacatccagactagccttatcccctttttcgttgaacaaaaaactcaattgatattcac |
39846769 |
T |
|
| Q |
206 |
atgaaatgtaaagtagctgagtgcaaaatggtagactacataatattccttctaagacaaagaattat |
273 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39846768 |
acgaaatgtaaagtagctgagtgcaaaatggtagactacataatattccttctaagacagagaattat |
39846701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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