View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8575_low_18 (Length: 280)

Name: NF8575_low_18
Description: NF8575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8575_low_18
NF8575_low_18
[»] scaffold0084 (1 HSPs)
scaffold0084 (134-261)||(38881-39012)
[»] scaffold0505 (2 HSPs)
scaffold0505 (10-99)||(11767-11856)
scaffold0505 (97-148)||(11878-11927)
[»] chr3 (3 HSPs)
chr3 (10-99)||(13086851-13086940)
chr3 (15-89)||(19833765-19833839)
chr3 (97-148)||(13086962-13087011)
[»] chr1 (1 HSPs)
chr1 (12-89)||(20518591-20518668)
[»] chr4 (2 HSPs)
chr4 (12-89)||(15567508-15567585)
chr4 (12-89)||(15580153-15580230)
[»] chr7 (1 HSPs)
chr7 (98-145)||(15683827-15683874)
[»] chr2 (1 HSPs)
chr2 (22-76)||(21068618-21068672)
[»] chr6 (1 HSPs)
chr6 (27-76)||(19169510-19169559)


Alignment Details
Target: scaffold0084 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 134 - 261
Target Start/End: Complemental strand, 39012 - 38881
Alignment:
Q  134 ggccgaaattcatag--cgcgagagaaccaaaaaacggccgaacttcaacac-agaaaacctacaatccaaccaattttcacccgttcttacgatccaat 230  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  39012 ggccgaaattcatagagcgcgagagaaccaaaaaacggccgaacttcaacaccagaaaacctacaatccaaccaattttcacccgttcttatgatccaat 38913  T
Q  231 acacaa-aaaatccacaaagcaacctgcatca 261  Q
    |||||| |||||||||||||||||||||||||    
T  38912 acacaacaaaatccacaaagcaacctgcatca 38881  T

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Target: scaffold0505 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 11767 - 11856
Alignment:
Q  10 cgtcacacgccaatctacaagcaattcttcaggagcagaaacacgctcctctcatcccaatccaagccaatttttctgcactcttcaaca 99  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11767 cgtcacacgccaatctgcaagcaattcttcaggagcagaaacacgctcctctcatcccaatccaagccagtttttctgcactcttcaaca 11856  T

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Target: scaffold0505; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 11878 - 11927
Alignment:
Q  97 acactataaataacaacctgcacacacacaatcaggaggccgaaattcatag 148  Q
    ||||||||||||||||| ||||||  |||||||||| |||||||||||||||    
T  11878 acactataaataacaacttgcaca--cacaatcagggggccgaaattcatag 11927  T

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Target: chr3 (Bit Score: 82; Significance: 9e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 10 - 99
Target Start/End: Original strand, 13086851 - 13086940
Alignment:
Q  10 cgtcacacgccaatctacaagcaattcttcaggagcagaaacacgctcctctcatcccaatccaagccaatttttctgcactcttcaaca 99  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13086851 cgtcacacgccaatctgcaagcaattcttcaggagcagaaacacgctcctctcatcccaatccaagccagtttttctgcactcttcaaca 13086940  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 19833765 - 19833839
Alignment:
Q  15 cacgccaatctacaagcaattcttcaggagcagaaacacgctcctctcatcccaatccaagccaatttttctgca 89  Q
    ||||||||||| |||||||| |||||||||||||| | |||||||||||||||||||||||| || |||||||||    
T  19833765 cacgccaatctgcaagcaatccttcaggagcagaaccgcgctcctctcatcccaatccaagcaaacttttctgca 19833839  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 13086962 - 13087011
Alignment:
Q  97 acactataaataacaacctgcacacacacaatcaggaggccgaaattcatag 148  Q
    ||||||||||||||||| ||||||  |||||||||| |||||||||||||||    
T  13086962 acactataaataacaacttgcaca--cacaatcagggggccgaaattcatag 13087011  T

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Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 20518591 - 20518668
Alignment:
Q  12 tcacacgccaatctacaagcaattcttcaggagcagaaacacgctcctctcatcccaatccaagccaatttttctgca 89  Q
    |||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||    
T  20518591 tcacacgccaatctgcaagcaattcttcaggagtagaaccacgctcctctcatcccaatccaagcaaatttttctgca 20518668  T

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Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 15567585 - 15567508
Alignment:
Q  12 tcacacgccaatctacaagcaattcttcaggagcagaaacacgctcctctcatcccaatccaagccaatttttctgca 89  Q
    |||||||||||||| |||||||| |||||||||||||| | |||||||||||||||||||||||| || |||||||||    
T  15567585 tcacacgccaatctgcaagcaatccttcaggagcagaaccgcgctcctctcatcccaatccaagcaaacttttctgca 15567508  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 15580230 - 15580153
Alignment:
Q  12 tcacacgccaatctacaagcaattcttcaggagcagaaacacgctcctctcatcccaatccaagccaatttttctgca 89  Q
    |||||||||||||| |||||||| |||||||||||||| | |||||||||||||||||||||||| || |||||||||    
T  15580230 tcacacgccaatctgcaagcaatccttcaggagcagaaccgcgctcctctcatcccaatccaagcaaacttttctgca 15580153  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 15683827 - 15683874
Alignment:
Q  98 cactataaataacaacctgcacacacacaatcaggaggccgaaattca 145  Q
    |||||||||||||||||||||||||||||| |||| ||||| ||||||    
T  15683827 cactataaataacaacctgcacacacacaaacagggggccggaattca 15683874  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 21068618 - 21068672
Alignment:
Q  22 atctacaagcaattcttcaggagcagaaacacgctcctctcatcccaatccaagc 76  Q
    |||| |||||||||   ||||||||||| |||||||||||||||| |||||||||    
T  21068618 atctgcaagcaatttaccaggagcagaatcacgctcctctcatcctaatccaagc 21068672  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 19169510 - 19169559
Alignment:
Q  27 caagcaattcttcaggagcagaaacacgctcctctcatcccaatccaagc 76  Q
    ||||||||| | |||||| |||| |||||||||||||||| |||||||||    
T  19169510 caagcaattttccaggagtagaatcacgctcctctcatcctaatccaagc 19169559  T

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