View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8575_low_2 (Length: 475)
Name: NF8575_low_2
Description: NF8575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8575_low_2 |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 18 - 462
Target Start/End: Complemental strand, 1718422 - 1717978
Alignment:
| Q |
18 |
cataccttacataaagtttgatatccattcaaagtttggtctgttctgagatccttactatattttaattgtattgtattgtctcatttgtgctgtctaa |
117 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1718422 |
cataccttacatgaagtttgatatccattcaaagtttggtctgttctgagatccttactatattttaattgtattgtattgtctcatttgtgctgtctaa |
1718323 |
T |
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| Q |
118 |
acactagcagttccaagcattgatgcagattaagtcactttggacaataaactcctcatatagatgcttgtacccctggttatatatatagatatctcag |
217 |
Q |
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| T |
1718322 |
acactagcagttccaagcattgatgcagattaagtcattttggacaataaactcctcatatagatgcttgtacccctggttatatatatagatatctcag |
1718223 |
T |
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| Q |
218 |
tcacattgttgagatttgtgttttattcttgtttgttctttgctaagatagatcaaatgttatatgcacttttgcagaaaagctatatagatgagtatat |
317 |
Q |
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| T |
1718222 |
tcacattgttgagatttgtgttttattctcgtttgttctttgctaagatagatcaaatgttatatgcacttttgcagaaaagctatatagatgagtatat |
1718123 |
T |
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| Q |
318 |
gactgcattacttgaacattgtaattttattgagggtgatttttgcaaccatgattcggttcaaaaagaagtttctaaagttatttgggaatctccaagt |
417 |
Q |
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| T |
1718122 |
gactgcattacttgaacattgtaattttattgagggtgatttttgcaaccatgattcggttcaaaaagaagtttctaaagttatttgggaatctccaagt |
1718023 |
T |
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| Q |
418 |
tgaaaaaaccatttttaatcctaaagaaaccaatccaaccattct |
462 |
Q |
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| T |
1718022 |
taaaaaaaccatttttaatcctaaagaaaccaatccaaccattct |
1717978 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 391 - 442
Target Start/End: Original strand, 21263206 - 21263257
Alignment:
| Q |
391 |
tctaaagttatttgggaatctccaagttgaaaaaaccatttttaatcctaaa |
442 |
Q |
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| T |
21263206 |
tctagagttatttgggaatatccaagttgaaaaagccatttttaatcctaaa |
21263257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 442
Target Start/End: Original strand, 11852 - 11903
Alignment:
| Q |
391 |
tctaaagttatttgggaatctccaagttgaaaaaaccatttttaatcctaaa |
442 |
Q |
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| T |
11852 |
tctagagttatttgagaatatccaagttgaaaaggccatttttaatcctaaa |
11903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 442
Target Start/End: Complemental strand, 42934919 - 42934868
Alignment:
| Q |
391 |
tctaaagttatttgggaatctccaagttgaaaaaaccatttttaatcctaaa |
442 |
Q |
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|||| ||||||||| |||| ||||||||||||| ||||||||||||||||| |
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| T |
42934919 |
tctagagttatttgagaatatccaagttgaaaaggccatttttaatcctaaa |
42934868 |
T |
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