View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8575_low_24 (Length: 246)
Name: NF8575_low_24
Description: NF8575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8575_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 35971208 - 35970985
Alignment:
| Q |
1 |
taagtcgcgcagaaggaccatacatgactcttgcagcataatcataagccaagagcagtttcttgagcagtaagaaaagcacctaaccaaagtttactac |
100 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
35971208 |
taagtcgcgcagaaggaccatacatgactctggcagcataatcataagc-aagagcagtttcttgagcagtaagagaagtacctaaccaaagtttactac |
35971110 |
T |
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| Q |
101 |
cttttggtttcctaatatcaccaacccaattcccccaagtcctttgtctaacacctctatatttattctctgggttttgaggtcctcctttccctttcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35971109 |
cttttggtttcctaatatcaccaacccaattcccc-----cctttgtctaacacctctatatttattctctgggttttgaggtcctcctttccctttcat |
35971015 |
T |
|
| Q |
201 |
acaccttttcttttgaaccttttgccctgat |
231 |
Q |
| |
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||||| |||| |||||||||||||||||||| |
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| T |
35971014 |
acaccctttc-tttgaaccttttgccctgat |
35970985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 35978428 - 35978650
Alignment:
| Q |
1 |
taagtcgcgcagaaggaccatacatgactcttgcagcataatcataagccaagagcagtttcttgagcagtaagaaaagcacctaaccaaagtttactac |
100 |
Q |
| |
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|||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| ||||||||| || |||||| ||||||||||||| |||| | |
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| T |
35978428 |
taagtcgcgcagaaggaccatacatggctctagcagcataatcataagc-aagagcagcttcttgagccgtcggaaaagtacctaaccaaagtctacttc |
35978526 |
T |
|
| Q |
101 |
ct---tttggtttcctaatatcaccaacccaattcccccaagtcctttgtctaacacctctatatttattctctgggttttgaggtcctcctttcccttt |
197 |
Q |
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|| ||||||| |||||| ||| ||||||| |||||||||||||| ||||||||||||| ||| |||||||| | |||||||||||||||||| ||||| |
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| T |
35978527 |
ctctatttggttccctaatctcagcaacccatttcccccaagtcctctgtctaacacctcgatacttattctccgagttttgaggtcctcctttaccttt |
35978626 |
T |
|
| Q |
198 |
catacaccttttcttttgaaccttt |
222 |
Q |
| |
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|||||||| |||| ||||||||||| |
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| T |
35978627 |
catacaccctttc-tttgaaccttt |
35978650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 35975403 - 35975625
Alignment:
| Q |
1 |
taagtcgcgcagaaggaccatacatgactcttgcagcataatcataagccaagagcagtttcttgagcagtaagaaaagcacctaaccaaagtttactac |
100 |
Q |
| |
|
||||||| ||||||| ||||||||| |||| |||||| |||||||||| |||||| | ||||||||| ||| | |||| ||||||| |||| |||| | |
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| T |
35975403 |
taagtcgtgcagaagtaccatacatagctctagcagcagaatcataagc-aagagcggcttcttgagctgtagggaaagtacctaacttaagtctactcc |
35975501 |
T |
|
| Q |
101 |
ct---tttggtttcctaatatcaccaacccaattcccccaagtcctttgtctaacacctctatatttattctctgggttttgaggtcctcctttcccttt |
197 |
Q |
| |
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| || |||| |||||| ||| | ||||| |||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
35975502 |
cactattaggttccctaatttcagccacccatttcccccaagtcctttgtctgacacctctatatttat--tctgagttttgaggtcctcctttcccttt |
35975599 |
T |
|
| Q |
198 |
catacaccttttcttttgaaccttttg |
224 |
Q |
| |
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|||||| | |||| ||||||||||||| |
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| T |
35975600 |
catacatcctttc-tttgaaccttttg |
35975625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 212
Target Start/End: Complemental strand, 37651016 - 37650927
Alignment:
| Q |
123 |
aacccaattcccccaagtcctttgtctaacacctctatatttattctctgggttttgaggtcctcctttccctttcatacaccttttctt |
212 |
Q |
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|||||| |||||||||||||||||||| ||||||||||| ||| | | ||||| || |||||||| ||||||||||||| |||||| |
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| T |
37651016 |
aacccatttcccccaagtcctttgtctcacacctctataattacaccgggagttttccggccctcctttacctttcatacaccctttctt |
37650927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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