View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8575_low_25 (Length: 245)

Name: NF8575_low_25
Description: NF8575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8575_low_25
NF8575_low_25
[»] chr4 (6 HSPs)
chr4 (27-231)||(27461733-27461937)
chr4 (19-231)||(27481864-27482076)
chr4 (129-231)||(27521498-27521600)
chr4 (129-231)||(18985935-18986037)
chr4 (33-95)||(27521609-27521671)
chr4 (70-111)||(18985876-18985917)
[»] chr5 (12 HSPs)
chr5 (26-231)||(1757880-1758085)
chr5 (129-231)||(29568541-29568643)
chr5 (151-221)||(29569859-29569929)
chr5 (129-186)||(29425179-29425236)
chr5 (29-95)||(29166788-29166854)
chr5 (129-189)||(29166869-29166929)
chr5 (183-231)||(29168141-29168189)
chr5 (27-95)||(29425109-29425176)
chr5 (54-110)||(27918457-27918513)
chr5 (129-175)||(27918527-27918573)
chr5 (65-110)||(29568662-29568707)
chr5 (65-110)||(29569970-29570015)
[»] chr3 (2 HSPs)
chr3 (156-227)||(25518343-25518414)
chr3 (29-109)||(25518264-25518344)


Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 27 - 231
Target Start/End: Original strand, 27461733 - 27461937
Alignment:
Q  27 tatatatatactcaaaccatccctcttttttcaaaactctttcccactcacacttgctttacaaccaaagttcaaattcaaatctnnnnnnnnnnnnnnn 126  Q
    |||||||| |||||||||||||||||||||||| |||||||| |||||||||||| |||||||| ||||||||||||||||||||                   
T  27461733 tatatatacactcaaaccatccctcttttttcataactctttgccactcacacttactttacaatcaaagttcaaattcaaatctaaaaacaaaagagaa 27461832  T
Q  127 nncaattcagaagaatgggtgatttacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaacatcatcaatgct 226  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27461833 aacaattcagaagaatgggtgatttacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaacatcatcaatgct 27461932  T
Q  227 tcatc 231  Q
    |||||    
T  27461933 tcatc 27461937  T

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Target: chr4; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 27481864 - 27482076
Alignment:
Q  19 atctctactatatatatactcaaaccatccctcttttttcaaaactctttcccactcacacttgctttacaaccaaagttcaaattcaaatctnnnnnnn 118  Q
    |||||| ||||||||||||||||||||| |||||||||||| |||||||| |||||||||||| |||||||||||||| ||||||||||||||           
T  27481864 atctctcctatatatatactcaaaccatacctcttttttcataactctttgccactcacacttactttacaaccaaagctcaaattcaaatctaaaaaca 27481963  T
Q  119 nnnnnnnnnncaattcagaagaatgggtgatttacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaacatca 218  Q
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27481964 aaaaacaaaacaattcagaagaatgggtgatttacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaacatca 27482063  T
Q  219 tcaatgcttcatc 231  Q
    ||||||| |||||    
T  27482064 tcaatgcctcatc 27482076  T

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Target: chr4; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 129 - 231
Target Start/End: Complemental strand, 27521600 - 27521498
Alignment:
Q  129 caattcagaagaatgggtgatttacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaacatcatcaatgcttc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27521600 caattcagaagaatgggtgatttacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaacatcatcaatgcttc 27521501  T
Q  229 atc 231  Q
    |||    
T  27521500 atc 27521498  T

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Target: chr4; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 129 - 231
Target Start/End: Original strand, 18985935 - 18986037
Alignment:
Q  129 caattcagaagaatgggtgatttacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaacatcatcaatgcttc 228  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18985935 caattcagaagaatgggtgatttacaaattcaacaagaatccatggtgatccctcacaaacagaaacaatccatgattattccaacatcatcaatgcttc 18986034  T
Q  229 atc 231  Q
    |||    
T  18986035 atc 18986037  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 27521671 - 27521609
Alignment:
Q  33 tatactcaaaccatccctcttttttcaaaactctttcccactcacacttgctttacaaccaaa 95  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||| ||||    
T  27521671 tatactcaaaccatccctcttttttcataactctttgccactcacacttactttacaatcaaa 27521609  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 18985876 - 18985917
Alignment:
Q  70 ccactcacacttgctttacaaccaaagttcaaattcaaatct 111  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  18985876 ccactcacacttactttacgaccaaagttcaaattcaaatct 18985917  T

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Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 26 - 231
Target Start/End: Original strand, 1757880 - 1758085
Alignment:
Q  26 ctatatatatactcaaaccatccctcttttttcaaaactctttcccactcacacttgctttacaaccaaagttcaaattcaaatctnnnnnnnnnnnnnn 125  Q
    ||||||||||||||||||||||||||||| |||| |||||||| | |||||||||| |||||||||||||||||||||||||||||                  
T  1757880 ctatatatatactcaaaccatccctctttgttcataactctttgcgactcacacttactttacaaccaaagttcaaattcaaatctaaaaacaaaaaaga 1757979  T
Q  126 nnncaattcagaagaatgggtgatttacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaacatcatcaatgc 225  Q
       || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1757980 aaacagttcagaagaatgggtgatttacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaacatcatcaatgc 1758079  T
Q  226 ttcatc 231  Q
    ||||||    
T  1758080 ttcatc 1758085  T

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Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 129 - 231
Target Start/End: Complemental strand, 29568643 - 29568541
Alignment:
Q  129 caattcagaagaatgggtgatttacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaacatcatcaatgcttc 228  Q
    |||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29568643 caattcagaaaaatgagtgatctacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaacatcatcaatgcttc 29568544  T
Q  229 atc 231  Q
    |||    
T  29568543 atc 29568541  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 29569929 - 29569859
Alignment:
Q  151 tacagattcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaacatcatca 221  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29569929 tacagattcaacaagaatccattttgatccctcacaaacacaaacaatccatgattattccaacatcatca 29569859  T

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Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 29425179 - 29425236
Alignment:
Q  129 caattcagaagaatgggtgatttacagattcaacaagaatccatgttgatccctcaca 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29425179 caattcagaagaatgggtgatttacagattcaacaagaatccatgttgatccctcaca 29425236  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 29166788 - 29166854
Alignment:
Q  29 tatatatactcaaaccatccctcttttttcaaaactctttcccactcacacttgctttacaaccaaa 95  Q
    ||||||||||| |||| |||||||||||||| |||||||| |||||||||||| |||||||||||||    
T  29166788 tatatatactccaaccttccctcttttttcataactctttgccactcacacttactttacaaccaaa 29166854  T

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Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 29166869 - 29166929
Alignment:
Q  129 caattcagaagaatgggtgatttacagattcaacaagaatccatgttgatccctcacaaac 189  Q
    ||||| ||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||    
T  29166869 caattgagaagaatgagtgatctacagattcaacaagaatccatgatgatccctcacaaac 29166929  T

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Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 29168141 - 29168189
Alignment:
Q  183 cacaaacagaaacaatccatgattattccaacatcatcaatgcttcatc 231  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||    
T  29168141 cacaaacagaaacaaagcatgattattccaacatcatcaatgcttcatc 29168189  T

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Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 29425109 - 29425176
Alignment:
Q  27 tatatatatactcaaaccatccctcttttttcaaaactctttcccactcacacttgctttacaaccaaa 95  Q
    |||||||||| ||||||| ||||||||||| || |||||||| |||||||||||| |||||||||||||    
T  29425109 tatatatataatcaaaccttccctcttttt-cataactctttgccactcacacttactttacaaccaaa 29425176  T

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Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 27918457 - 27918513
Alignment:
Q  54 ttttcaaaactctttcccactcacacttgctttacaaccaaagttcaaattcaaatc 110  Q
    |||||| |||||||| ||||||| |||| |||| |||||||||||||||||||||||    
T  27918457 ttttcataactctttgccactcagacttactttgcaaccaaagttcaaattcaaatc 27918513  T

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Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 27918527 - 27918573
Alignment:
Q  129 caattcagaagaatgggtgatttacagattcaacaagaatccatgtt 175  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||    
T  27918527 caattcagcagaatgagtgatctacagattcaacaagaatccatgtt 27918573  T

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Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 29568707 - 29568662
Alignment:
Q  65 ctttcccactcacacttgctttacaaccaaagttcaaattcaaatc 110  Q
    |||| |||||||||||| ||||||||||||| ||||||||||||||    
T  29568707 ctttgccactcacacttactttacaaccaaaattcaaattcaaatc 29568662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 29570015 - 29569970
Alignment:
Q  65 ctttcccactcacacttgctttacaaccaaagttcaaattcaaatc 110  Q
    |||| |||||||||||  |||||| |||||||||||||||||||||    
T  29570015 ctttgccactcacactaactttactaccaaagttcaaattcaaatc 29569970  T

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Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 25518343 - 25518414
Alignment:
Q  156 attcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaacatcatcaatgctt 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25518343 attcaacaagaatccatgttgatccctcacaaacagaaacaatccatgattattccaacatcatcaatgctt 25518414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 25518264 - 25518344
Alignment:
Q  29 tatatatactcaaaccatccctcttttttcaaaactctttcccactcacacttgctttacaaccaaagttcaaattcaaat 109  Q
    |||||||||||||||| |||||||||||||| |||||||| |||||||||||| ||||||||| ||| |||||||||||||    
T  25518264 tatatatactcaaaccttccctcttttttcacaactctttgccactcacacttactttacaacaaaaattcaaattcaaat 25518344  T

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