View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8575_low_31 (Length: 221)
Name: NF8575_low_31
Description: NF8575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8575_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 206
Target Start/End: Original strand, 2884355 - 2884548
Alignment:
| Q |
13 |
attattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagttggtttcaaatgtcctgagaggaaag |
112 |
Q |
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| T |
2884355 |
attattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagttggtttcaaatgtcctgagaggaaag |
2884454 |
T |
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| Q |
113 |
gtgcagctgactttcttcaagaagtaagtcaaagtttatatcttgagtccattctttcaagtttttggtgaacactatatgaagatatataagt |
206 |
Q |
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| T |
2884455 |
gtgcagcggactttcttcaagaagtaagtcaaagtttatatcttgagtccattctttcaagtttttggtgaacactatatgaagatatataagt |
2884548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 2900609 - 2900466
Alignment:
| Q |
13 |
attattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagttggtttcaaatgtcctgagaggaaag |
112 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||| || |||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2900609 |
attattcttatatccgatggtcaaattgtctatcaaggaccgcgtgaacatgttcttgacttttttgaatcagttggtttcaaatgtcctgagaggaaag |
2900510 |
T |
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| Q |
113 |
gtgcagctgactttcttcaagaagtaagtcaaagtttatatctt |
156 |
Q |
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| T |
2900509 |
gggtagctgactttcttcaagaagtaagtcaaagtttatatctt |
2900466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 2874361 - 2874493
Alignment:
| Q |
13 |
attattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagttggtttcaaatgtcctgagaggaaag |
112 |
Q |
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| T |
2874361 |
attattcttttatctgatggtgaaattgtttaccaaggacctcgtgaaaatgttcttgaattttttgaatctattggtttcaaatgtcctgagaggaaag |
2874460 |
T |
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| Q |
113 |
gtgcagctgactttcttcaagaagtaagtcaaa |
145 |
Q |
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| | ||||| || ||||||||||||||||||| |
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| T |
2874461 |
gcgttgctgatttccttcaagaagtaagtcaaa |
2874493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 44225455 - 44225341
Alignment:
| Q |
25 |
tctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagttggtttcaaatgtcctgagaggaaaggtgcagctgact |
124 |
Q |
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|||||||| ||| |||| ||||| || || |||||| || ||||||| ||||||||| || | ||||||||||||||||| ||||||||||| ||||||| |
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| T |
44225455 |
tctgatggccaagttgtataccatggcccccgcgaatatgttcttgacttttttgaaacaatgggtttcaaatgtcctgaaaggaaaggtgctgctgact |
44225356 |
T |
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| Q |
125 |
ttcttcaagaagtaa |
139 |
Q |
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||||||||||||||| |
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| T |
44225355 |
ttcttcaagaagtaa |
44225341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 44236269 - 44236155
Alignment:
| Q |
25 |
tctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagttggtttcaaatgtcctgagaggaaaggtgcagctgact |
124 |
Q |
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|||||||| ||| |||| ||||| || || |||||| || ||||||| ||||||||| || | ||||||||||||||||| ||||||||||| ||||||| |
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| T |
44236269 |
tctgatggccaagttgtataccatggcccccgcgaatatgttcttgacttttttgaaacaatgggtttcaaatgtcctgaaaggaaaggtgccgctgact |
44236170 |
T |
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| Q |
125 |
ttcttcaagaagtaa |
139 |
Q |
| |
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||||||||||||||| |
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| T |
44236169 |
ttcttcaagaagtaa |
44236155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 44213297 - 44213180
Alignment:
| Q |
22 |
atatctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagttggtttcaaatgtcctgagaggaaaggtgcagctg |
121 |
Q |
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||||||||||| ||| |||| ||||| || || |||||| || ||||||| ||||| ||||| | ||||||||||||||||| |||||||||| |||| |
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| T |
44213297 |
atatctgatggccaagttgtataccatggcccccgcgaatatgttcttgactttttcgaatctatgggtttcaaatgtcctgaaaggaaaggtgttgctg |
44213198 |
T |
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| Q |
122 |
actttcttcaagaagtaa |
139 |
Q |
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| T |
44213197 |
attttcttcaagaagtaa |
44213180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 4498079 - 4498149
Alignment:
| Q |
13 |
attattcttatatctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatc |
83 |
Q |
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||||||||||||||||| |||||| |||| |||||||| || || ||||| ||| ||||||| |||||||| |
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| T |
4498079 |
attattcttatatctgagggtcaagttgtgtaccaaggtccacgtgaacacattgttgaattctttgaatc |
4498149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 39550676 - 39550630
Alignment:
| Q |
67 |
cttgaattttttgaatcagttggtttcaaatgtcctgagaggaaagg |
113 |
Q |
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||||||||||| |||||| ||||||| ||||||||||| |||||||| |
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| T |
39550676 |
cttgaatttttcgaatcaattggttttaaatgtcctgataggaaagg |
39550630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 39335095 - 39335171
Alignment:
| Q |
25 |
tctgatggtcaaattgtctaccaaggacctcgcgaacatattcttgaattttttgaatcagttggtttcaaatgtcc |
101 |
Q |
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| T |
39335095 |
tctgatagtcatattatataccaaggtcctcgggaacacgtgcttgaatttttcgaatcaattggttttaaatgtcc |
39335171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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