View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8575_low_32 (Length: 214)
Name: NF8575_low_32
Description: NF8575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8575_low_32 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 21 - 198
Target Start/End: Complemental strand, 43948409 - 43948232
Alignment:
| Q |
21 |
ggaacatattgtgatttagcttcttctatttatactggatgggaccatatattcgcttgagttgcacattcagtttatgtaatatcggggnnnnnnnnnn |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43948409 |
ggaacatattgtgatttagcttcttctatttatactggatgggaccatatattcgtttgagttgcacattcagtttatgtaatatcggggttgttttttt |
43948310 |
T |
|
| Q |
121 |
ngggaaacttcctagtttaaattatctctatgttgctctacatcataggattttgtaactttctaagttatctctctg |
198 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43948309 |
tgggcaacttcctagtttaaattgtctctatgttgctctacatcataggattttgtaactttctaagttatctctctg |
43948232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 11158672 - 11158756
Alignment:
| Q |
21 |
ggaacatattgtgatttagcttcttctatttatactggatgggaccatatattcgcttgagttgcacattcagtttatgtaatatc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| | || |||||||| | |||||||||||| || |||||||||||| |
|
|
| T |
11158672 |
ggaacatattgtgatttagcttcttctatttatgctggat-gaacagtatattcgttcgagttgcacatttagcttatgtaatatc |
11158756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 11158771 - 11158817
Alignment:
| Q |
126 |
aacttcctagtttaaattatctctatgttgctctacatcataggatt |
172 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11158771 |
aacttcctagtccaaattatctctatgttgctctacatcataggatt |
11158817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 11163246 - 11163214
Alignment:
| Q |
21 |
ggaacatattgtgatttagcttcttctatttat |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
11163246 |
ggaacatattgtgatttagcttcttctatttat |
11163214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 53
Target Start/End: Complemental strand, 11186756 - 11186725
Alignment:
| Q |
22 |
gaacatattgtgatttagcttcttctatttat |
53 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
11186756 |
gaacatattgtgatttagcttcttctatttat |
11186725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University