View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8575_low_4 (Length: 422)
Name: NF8575_low_4
Description: NF8575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8575_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 401
Target Start/End: Complemental strand, 38362838 - 38362463
Alignment:
| Q |
19 |
ataaacgtaatgctgatgaagacaattgtattctatactgtggggaatttaatgttgttttcctcttgagttccctacctacgtgtaaggtactctatat |
118 |
Q |
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| T |
38362838 |
ataaacgtaatgctgatgaagacaattgtattctatactgtggggaatttaatgttgttttcctcttgagttccctac----gtgtaaggtactctaaat |
38362743 |
T |
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| Q |
119 |
caatcaattggtatgtgaggcaccaataaatgcaaatgagtctgactgttaccaaaattggactactgaccatatcacacaaacacaatactatatgagc |
218 |
Q |
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| T |
38362742 |
caatcaattggtatgtgaggcaccaataaatgcaaatgagtctgactgttaccaaaattggactactgaccatatcacacagacaca---ctatatgagc |
38362646 |
T |
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| Q |
219 |
acaaactattcattcatattccatccaaatatttcaaatgacttgaaaatcagctttgcatgctctatcctgaacttcttcaaactatcacttgcgtact |
318 |
Q |
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| T |
38362645 |
acaaactattcattcatattccatccaaatatttcaaatgacttgaaaatcagctttgcatgctctatcctgaacttcttcaaaatattacttgcgtact |
38362546 |
T |
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| Q |
319 |
ttttctaagaaataatgattccatcattttgttcaactacatcaaggtcaaggaaatattacattagacccaaatcatcattt |
401 |
Q |
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| T |
38362545 |
ttttctaagaaatgatgattccatcattttgttgaactacatcaaggtcaaggaaatattacattagacccaaatcatcattt |
38362463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 343
Target Start/End: Complemental strand, 42303468 - 42303396
Alignment:
| Q |
271 |
gctttgcatgctctatcctgaacttcttcaaactatcacttgcgtactttttctaagaaataatgattccatc |
343 |
Q |
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|||||| |||||| ||| |||||||||||||| |||||||||| ||||| || | |||||||| ||||||||| |
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| T |
42303468 |
gctttgaatgctccatcttgaacttcttcaaaatatcacttgcatacttcttttgagaaataaagattccatc |
42303396 |
T |
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