View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8575_low_6 (Length: 404)
Name: NF8575_low_6
Description: NF8575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8575_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 20 - 391
Target Start/End: Original strand, 15504247 - 15504618
Alignment:
| Q |
20 |
aggtaagctggacgtggaaatcctgaagctacaaaagtaagcttttgtgaaaacgtgaaaatccaccgtgattttctggtaaccaccgttaaaccaaaag |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| | |
|
|
| T |
15504247 |
aggtaagctggacgtggaaatcctgaagctacaaaagtaagcttttgtgaaaacgtgaaaatccaccgtgattttctagtaaccaccgctaaaccaaacg |
15504346 |
T |
|
| Q |
120 |
agcactaagaccaagagtttagaatgtcgaaaagaaaaaacttaagtgaaatttgttttgttaaatctaggtatcattacgcacatatgcaaagattaat |
219 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| | |||||||||| |
|
|
| T |
15504347 |
agcactaagaccatgagtttagaatgtcaaaaagaaaaaacttaagtgaaatttgttttgttaaatttaggtatcattacacacatctataaagattaat |
15504446 |
T |
|
| Q |
220 |
ctctcaaaataactgagatctatttaagggataagagattgaactttcaaccaaatgattaggagtcaaatactatttcggtcctgaaaattataagggt |
319 |
Q |
| |
|
| ||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
15504447 |
cagtcaaaataatcgagatatatttaagggataagagattgaacttccaaccaaatgattaggagtcaaatactatttcgatcctggaaattataagggt |
15504546 |
T |
|
| Q |
320 |
cgagcaatttactcgataatagcaaattaatcccttacattaaacaacatcaatatattaagtttttccatc |
391 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||| |||||| |
|
|
| T |
15504547 |
cgagcaatttactcgataatagcaaattagtcccttatattaaataacatcaatatattaagtttgtccatc |
15504618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 17302350 - 17302453
Alignment:
| Q |
24 |
aagctggacgtggaaatcctgaagctacaaaagtaagcttttgtgaaaacgtgaaaatccaccgtgattttctggtaaccaccgttaaaccaaaagagca |
123 |
Q |
| |
|
||||| ||||||||||| || |||||||||||| ||||||||||| |||||||||||| ||| |||||| | | |||||||| ||||||||| ||||| |
|
|
| T |
17302350 |
aagcttgacgtggaaattctaaagctacaaaagcaagcttttgtgtaaacgtgaaaattcactgtgattctacagaaaccaccgctaaaccaaacgagca |
17302449 |
T |
|
| Q |
124 |
ctaa |
127 |
Q |
| |
|
|||| |
|
|
| T |
17302450 |
ctaa |
17302453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 2260186 - 2260079
Alignment:
| Q |
20 |
aggtaagctggacgtggaaatcctgaagctacaaaagtaagcttttgtgaaaacgtgaaaatccaccgtgattttctggtaaccaccgttaaaccaaaag |
119 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||||||| || ||||| ||||||| | |||||||||||| ||| ||| | |||||||| ||||||||| |
|
|
| T |
2260186 |
aggtaagttggacgtgaaaatcttgaagctacaaaaacaaacttttatgaaaacataaaaatccaccgtaattctctagaaaccaccgataaaccaaacc |
2260087 |
T |
|
| Q |
120 |
agcactaa |
127 |
Q |
| |
|
|||||||| |
|
|
| T |
2260086 |
agcactaa |
2260079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 47492041 - 47492134
Alignment:
| Q |
24 |
aagctggacgtggaaatcctgaagctacaaaagtaagcttttgtgaaaacgtgaaaatccaccgtgattttctggtaaccaccgttaaaccaaa |
117 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||| | | |||||||||||||||||| |
|
|
| T |
47492041 |
aagctggacatggaaatcctgaagttacaaaagtaagattttgtgaaaacgtgaaaatccaccgtaattctttaaaaaccaccgttaaaccaaa |
47492134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 34113326 - 34113423
Alignment:
| Q |
27 |
ctggacgtggaaatcctgaagctacaaaagtaagcttttgtgaaaacgtgaaaatccaccgtgattttctggtaaccaccgttaaaccaaaagagcac |
124 |
Q |
| |
|
||||| || |||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| | ||||| | ||||||||| |||||| |
|
|
| T |
34113326 |
ctggatgtagaaatcttgaaggtacaaaagtaaacttttgtgaaaacgtgaaaatccaccgtgattctctagaaaccattgctaaaccaaacgagcac |
34113423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 43901867 - 43901955
Alignment:
| Q |
28 |
tggacgtggaaatcctgaagctacaaaagtaagcttttgtgaaaacgtgaaaatccaccgtgattttctggtaaccaccgttaaaccaaa |
117 |
Q |
| |
|
|||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||| || | ||| |||| ||||||||| |
|
|
| T |
43901867 |
tggatgtggaaatcctgaagctacaaa-gcaagcttttgtgaaaacgtgaaaatccaccgtaatttgcttgaaacaaccgctaaaccaaa |
43901955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 11346099 - 11345995
Alignment:
| Q |
24 |
aagctggacgtggaaatcctgaagctacaaaagtaagcttttgtgaaaacgtgaaaatccaccgtgattttctggtaaccaccgttaaaccaaaagagca |
123 |
Q |
| |
|
||||| |||||| |||||||||||||||||||| ||| |||||| |||| || ||| ||||||||||| | |||||||| |||||||| || || |
|
|
| T |
11346099 |
aagctagacgtgaaaatcctgaagctacaaaagcaaggttttgtagaaacatggaaacttaccgtgattttataaaaaccaccgccaaaccaaacgaaca |
11346000 |
T |
|
| Q |
124 |
ctaag |
128 |
Q |
| |
|
||||| |
|
|
| T |
11345999 |
ctaag |
11345995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 125
Target Start/End: Complemental strand, 44701583 - 44701477
Alignment:
| Q |
23 |
taagctggacgtggaaatcctgaagctacaaaag----taagcttttgtgaaaacgtgaaaatccaccgtgattttctggtaaccaccgttaaaccaaaa |
118 |
Q |
| |
|
||||||||||||||||||||| || |||||||| ||||||||| ||||||||| |||||||| |||||| ||| | ||||| ||||||| |||| |
|
|
| T |
44701583 |
taagctggacgtggaaatcctaaaagtacaaaagcaagtaagcttttatgaaaacgtaaaaatccattgtgattctctagaaaccaacgttaaatcaaat |
44701484 |
T |
|
| Q |
119 |
gagcact |
125 |
Q |
| |
|
||||||| |
|
|
| T |
44701483 |
gagcact |
44701477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 6726038 - 6725950
Alignment:
| Q |
29 |
ggacgtggaaatcctgaagctacaaaagtaagcttttgtgaaaacgtgaaaatccaccgtgattttctggtaaccaccgttaaaccaaa |
117 |
Q |
| |
|
|||| ||||||||||| || || ||| | ||| ||||||||||||||||||||||||| ||||| | | | |||||||| |||| |||| |
|
|
| T |
6726038 |
ggacttggaaatcctggagttataaacgcaagtttttgtgaaaacgtgaaaatccaccatgattctatagaaaccaccgctaaatcaaa |
6725950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 1299494 - 1299461
Alignment:
| Q |
48 |
ctacaaaagtaagcttttgtgaaaacgtgaaaat |
81 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
|
|
| T |
1299494 |
ctacaaaagtaagcttttatgaaaacgtgaaaat |
1299461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University