View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8575_low_7 (Length: 401)

Name: NF8575_low_7
Description: NF8575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8575_low_7
NF8575_low_7
[»] chr5 (2 HSPs)
chr5 (292-379)||(3382098-3382185)
chr5 (1-101)||(3381856-3381952)
[»] chr4 (3 HSPs)
chr4 (283-379)||(2351294-2351389)
chr4 (27-107)||(4652313-4652393)
chr4 (77-137)||(2360514-2360574)
[»] chr7 (1 HSPs)
chr7 (283-355)||(7735145-7735217)
[»] chr1 (8 HSPs)
chr1 (31-138)||(925617-925724)
chr1 (305-379)||(50512273-50512348)
chr1 (27-95)||(39451768-39451836)
chr1 (84-138)||(50512565-50512619)
chr1 (27-135)||(17965031-17965139)
chr1 (28-105)||(9924113-9924190)
chr1 (338-379)||(39452066-39452107)
chr1 (27-97)||(9995467-9995537)
[»] scaffold0458 (2 HSPs)
scaffold0458 (27-95)||(11826-11894)
scaffold0458 (338-379)||(11565-11606)
[»] chr3 (1 HSPs)
chr3 (77-140)||(503039-503102)
[»] chr8 (2 HSPs)
chr8 (32-70)||(3809981-3810019)
chr8 (27-103)||(29239357-29239433)
[»] chr2 (1 HSPs)
chr2 (31-137)||(27516053-27516159)
[»] chr6 (2 HSPs)
chr6 (29-98)||(8491579-8491648)
chr6 (26-98)||(12258494-12258566)


Alignment Details
Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 292 - 379
Target Start/End: Original strand, 3382098 - 3382185
Alignment:
Q  292 tacacagtgaaattggatcctataatttaaaatttaagtcaaataatattagaacacaaattatattttttgaaattgtccaattata 379  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3382098 tacacagtgaacttggaccctataatttaaaatttaagtcaaataatattagaacacaaattatattttttgaaattttccaattata 3382185  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 3381856 - 3381952
Alignment:
Q  1 tctcactcctagatgccacagatataactactagaaactatcgatttacctgcggattttccagcggaaaaaagtgcgcaggaatacctgaggattttcc 100  Q
    ||||||||  |||||||| |||||| ||||    |||||||| |||||||||||||| |||| ||||||| || | |||||||||| ||||| |||||||    
T  3381856 tctcactctaagatgccatagatatcacta----aaactatctatttacctgcggatattccggcggaaataaatccgcaggaatatctgagaattttcc 3381951  T

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Target: chr4 (Bit Score: 69; Significance: 7e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 283 - 379
Target Start/End: Original strand, 2351294 - 2351389
Alignment:
Q  283 cttcctatttacacagtgaaattggatcctataatttaaaatttaagtcaaataatattagaacacaaattatattttttgaaattgtccaattata 379  Q
    |||||||||||||||||||| ||||| | |||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  2351294 cttcctatttacacagtgaacttggaccatatactttaaaatttaagtcaaataatatttgaacacaaattat-ttttttgaaattgtccaattata 2351389  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 4652393 - 4652313
Alignment:
Q  27 actactagaaactatcgatttacctgcggattttccagcggaaaaaagtgcgcaggaatacctgaggattttcctgcggtt 107  Q
    ||||||||||| ||||||||||||||||||||||||  | ||||| | | ||||||||| |||||||||||| ||||||||    
T  4652393 actactagaaattatcgatttacctgcggattttcctactgaaaatatttcgcaggaatccctgaggattttgctgcggtt 4652313  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 2360574 - 2360514
Alignment:
Q  77 cgcaggaatacctgaggattttcctgcggttttgattacactgtggacatttcctgcggat 137  Q
    ||||||| |||||||||| |||||||||||||   |||||||| ||||||||| |||||||    
T  2360574 cgcaggattacctgaggaatttcctgcggtttccgttacactgaggacatttcatgcggat 2360514  T

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Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 283 - 355
Target Start/End: Complemental strand, 7735217 - 7735145
Alignment:
Q  283 cttcctatttacacagtgaaattggatcctataatttaaaatttaagtcaaataatattagaacacaaattat 355  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||  ||||||||||||    
T  7735217 cttcctatttacacagtgaacttggaccctataatttaaaatttaagtcaaatagtatttcaacacaaattat 7735145  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 925724 - 925617
Alignment:
Q  31 ctagaaactatcgatttacctgcggattttccagcggaaaaaagtgcgcaggaatacctgaggattttcctgcggttttgattacactgtggacatttcc 130  Q
    ||||||||||| ||| |||||||||||||||| |||||||  | | |||| |||||||||||||||||| || ||||||  |||||||| |||  |||||    
T  925724 ctagaaactatagatatacctgcggattttccggcggaaattaatccgcatgaatacctgaggattttcatggggttttcgttacactgcggaactttcc 925625  T
Q  131 tgcggatt 138  Q
    ||||||||    
T  925624 tgcggatt 925617  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 305 - 379
Target Start/End: Complemental strand, 50512348 - 50512273
Alignment:
Q  305 tggatcctataatttaaaatttaagtcaaa-taatattagaacacaaattatattttttgaaattgtccaattata 379  Q
    |||| ||||||| || |||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||    
T  50512348 tggaccctataactttaaatttaagtcaaaataatattaggacacaaattatattttttgaaaatgtccaattata 50512273  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 39451768 - 39451836
Alignment:
Q  27 actactagaaactatcgatttacctgcggattttccagcggaaaaaagtgcgcaggaatacctgaggat 95  Q
    ||||| |||||||||||||||||||||||||| ||||||||||| |  | |||||||||||||||||||    
T  39451768 actacaagaaactatcgatttacctgcggattgtccagcggaaatatatccgcaggaatacctgaggat 39451836  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 50512619 - 50512565
Alignment:
Q  84 atacctgaggattttcctgcggttttgattacactgtggacatttcctgcggatt 138  Q
    ||||||| |||||||||||||||||| ||||||||||||| |||||| |||||||    
T  50512619 atacctgcggattttcctgcggttttcattacactgtggaaatttccagcggatt 50512565  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 27 - 135
Target Start/End: Complemental strand, 17965139 - 17965031
Alignment:
Q  27 actactagaaactatcgatttacctgcggattttccagcggaaaaaagtgcgcaggaatacctgaggattttcctgcggttttgattacactgtggacat 126  Q
    |||| |||||||||||||| |||||||| | ||||| || ||||    | ||||||||||||||||||||||| ||||||| | |||| ||| ||| ||     
T  17965139 actattagaaactatcgatgtacctgcgaaatttccggctgaaatttatccgcaggaatacctgaggattttcatgcggttatcattatactatggtcac 17965040  T
Q  127 ttcctgcgg 135  Q
    |||||||||    
T  17965039 ttcctgcgg 17965031  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 105
Target Start/End: Complemental strand, 9924190 - 9924113
Alignment:
Q  28 ctactagaaactatcgatttacctgcggattttccagcggaaaaaagtgcgcaggaatacctgaggattttcctgcgg 105  Q
    |||||||||||| ||  ||| ||||||||||| |  |||||| | ||| |||||||||||||||||||||| ||||||    
T  9924190 ctactagaaactctcatttttcctgcggatttacatgcggaagatagtccgcaggaatacctgaggattttgctgcgg 9924113  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 379
Target Start/End: Original strand, 39452066 - 39452107
Alignment:
Q  338 tattagaacacaaattatattttttgaaattgtccaattata 379  Q
    ||||||||||||||||||||||||||||  ||||||||||||    
T  39452066 tattagaacacaaattatattttttgaacatgtccaattata 39452107  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 9995537 - 9995467
Alignment:
Q  27 actactagaaactatcgatttacctgcggattttccagcggaaaaaagtgcgcaggaatacctgaggattt 97  Q
    ||||||||||||| || |||| |||| ||||||||  |||||||| ||| || |||||||||||| |||||    
T  9995537 actactagaaactctcaattttcctgtggattttcatgcggaaaatagtccgtaggaatacctgaagattt 9995467  T

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Target: scaffold0458 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 11894 - 11826
Alignment:
Q  27 actactagaaactatcgatttacctgcggattttccagcggaaaaaagtgcgcaggaatacctgaggat 95  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |  | ||| |||||||||||||||    
T  11894 actactagaaactatcgatttacctgcggattgtccagcggaaatatatccgctggaatacctgaggat 11826  T

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Target: scaffold0458; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 379
Target Start/End: Complemental strand, 11606 - 11565
Alignment:
Q  338 tattagaacacaaattatattttttgaaattgtccaattata 379  Q
    ||||||||||||||||||||||||||||  ||||||||||||    
T  11606 tattagaacacaaattatattttttgaacatgtccaattata 11565  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 503102 - 503039
Alignment:
Q  77 cgcaggaatacctgaggattttcctgcggttttgattacactgtggacatttcctgcggattat 140  Q
    ||||||||||||||||||||||| ||||||| | |||| || |||| |||||||||||| ||||    
T  503102 cgcaggaatacctgaggattttcatgcggttatcattataccgtggtcatttcctgcggcttat 503039  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 3810019 - 3809981
Alignment:
Q  32 tagaaactatcgatttacctgcggattttccagcggaaa 70  Q
    ||||||||||||| || ||||||||||||||||||||||    
T  3810019 tagaaactatcgaatttcctgcggattttccagcggaaa 3809981  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 29239357 - 29239433
Alignment:
Q  27 actactagaaactatcgatttacctgcggattttccagcggaaaaaagtgcgcaggaatacctgaggattttcctgc 103  Q
    ||||| ||||| | || |||| |||||||||||||  |||||||| | | ||||| |||||||||||||||| ||||    
T  29239357 actaccagaaattctctatttccctgcggattttcatgcggaaaacaatccgcagcaatacctgaggattttgctgc 29239433  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 27516159 - 27516053
Alignment:
Q  31 ctagaaactatcgatttacctgcggattttccagcggaaaaaagtgcgcaggaatacctgaggattttcctgcggttttgattacactgtggacatttcc 130  Q
    |||||| ||||| | || |||||||||||||| | |||||    | ||||||||||| ||||||||||||||| |||||   | ||||| |||||||||     
T  27516159 ctagaatctatcaaatttcctgcggattttcctgaggaaatttatccgcaggaatacttgaggattttcctgctgttttcgatgcactgaggacatttca 27516060  T
Q  131 tgcggat 137  Q
    |||||||    
T  27516059 tgcggat 27516053  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 8491648 - 8491579
Alignment:
Q  29 tactagaaactatcgatttacctgcggattttccagcggaaaaaagtgcgcaggaatacctgaggatttt 98  Q
    ||||||||||| ||| ||| ||||||||| |||  |||||||| | | | ||||||||||||||||||||    
T  8491648 tactagaaactctcgtttttcctgcggatgttcatgcggaaaataatccacaggaatacctgaggatttt 8491579  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 12258494 - 12258566
Alignment:
Q  26 aactactagaaactatcgatttacctgcggattttccagcggaaaaaagtgcgcaggaatacctgaggatttt 98  Q
    |||||||||| |||  |||||| |||| |||||||||||| |||||| ||  |||| ||| ||||||||||||    
T  12258494 aactactagacacttccgattttcctgtggattttccagcagaaaaacgtctgcagaaattcctgaggatttt 12258566  T

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