View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8575_low_8 (Length: 393)
Name: NF8575_low_8
Description: NF8575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8575_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 46984369 - 46984751
Alignment:
| Q |
1 |
gttaccaaaccggttaatacccttcctatcaccaagagcctgcagcaaagcctggagacaaagtaacagaaatctatgctttactatgatgatagataga |
100 |
Q |
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| T |
46984369 |
gttaccaaaccggttaatacccttcctatcaccaagagcctgcagcaaagcctggagacgaagtaacagaaatctatgctttactatgatgatagataga |
46984468 |
T |
|
| Q |
101 |
ggctaacacactaaaaaacaaagctctaagttaattgaaaattcccaccgtgataagattataatcaatgttagagtcgttatggtcaattagttaaatt |
200 |
Q |
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| T |
46984469 |
ggctaacacactaaaaaacaaagctctaagttaattgaaaattcccaccgtgataagattataatcaatgttagagtcgttatggtcaattagttaaatt |
46984568 |
T |
|
| Q |
201 |
gcattttgcatagaaaggatgaagtccaatgcaaagatttaacttcacaccaatctttaaacat------cattccaggaacagctgtaataagtagagc |
294 |
Q |
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| T |
46984569 |
gcattttgcatagaaaggatgaagtccaatgcaaagatttaacttcacaccaatctttaaacatgtttaacattccaggaacagctgtaataagtagagc |
46984668 |
T |
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| Q |
295 |
caaaaagaaaagaaataaacagctcacttagctgttggcagtaccgttccaatagcaagagcgacatcttcatttgtgtgatg |
377 |
Q |
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| T |
46984669 |
caaaaagaaaagaaataaacagctcacttagctgttggcagtaccgttccaatagcaagagcgacatcttcatttgtgtgatg |
46984751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 31685018 - 31685090
Alignment:
| Q |
1 |
gttaccaaaccggttaatacccttcctatcaccaagagcctgcagcaaagcctggagacaaagtaacagaaat |
73 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
31685018 |
gttaccaaaccggttaataccattcctatcaccaagagcctgcagcaaagcctggagatgaagtaatagaaat |
31685090 |
T |
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