View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8575_low_9 (Length: 392)
Name: NF8575_low_9
Description: NF8575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8575_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 12628685 - 12629046
Alignment:
| Q |
18 |
gcttctgttcacagttcacacaataaaatccccaaatctaagaatgaatttatgatgacatggttatttcatatttgattgaaccaaataataatgaatg |
117 |
Q |
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| T |
12628685 |
gcttctgttcacagttcacacaataaaatccccaaatctaagaatgaatttatgatgacatggttatttcatatttgattgaaccaaataataatgaatg |
12628784 |
T |
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| Q |
118 |
aaatttggggtttgttttgatgatggaatgaatagaatttggggaaaggagcttcaatggaaaatgatgaaaagggagattgttgaggagtttgttgatt |
217 |
Q |
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| T |
12628785 |
aaatttggggtttgttttgatgatggaatggatagaatttggggaaaggagcttcaatggaaaatgatgaaaatggagagtgctgaggagtttgttgatt |
12628884 |
T |
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| Q |
218 |
tatagagagaagaagagatggggacgagttgttgtagttattgttgtgtagtttctggaagaagaaattgagatttttaatgatcaaagttatgttggtg |
317 |
Q |
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| T |
12628885 |
tatagagagaagaagagatggggacgggttgttgttgttattgttgtgtagtttctggaagaagaaattgagatttttaatgatcaaagttatgttggtg |
12628984 |
T |
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| Q |
318 |
aatgttgttgggaagaattgggtttgatgaaaagaagaagaatgttgctgggaagaagatga |
379 |
Q |
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| T |
12628985 |
aatgttgttgggaagaattgggtttgatgaaaagaagaagaatgttgctgggaagaagatga |
12629046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 277 - 379
Target Start/End: Original strand, 12629064 - 12629166
Alignment:
| Q |
277 |
agaagaaattgagatttttaatgatcaaagttatgttggtgaatgttgttgggaagaattgggtttgatgaaaagaagaagaatgttgctgggaagaaga |
376 |
Q |
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| T |
12629064 |
agaagaaattgagatttttaatgatcaaagttatgttggtgaatgttgttgggaagaattgggtttgatgaaaagaagaagaatgttgctgggaagaaga |
12629163 |
T |
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| Q |
377 |
tga |
379 |
Q |
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| T |
12629164 |
tga |
12629166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 321 - 379
Target Start/End: Complemental strand, 18750602 - 18750544
Alignment:
| Q |
321 |
gttgttgggaagaattgggtttgatgaaaagaagaagaatgttgctgggaagaagatga |
379 |
Q |
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| T |
18750602 |
gttgttggaaagaattgggtttgatgaaaagaagaagaatgttgttgggaagaagatga |
18750544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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