View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8576_high_10 (Length: 242)

Name: NF8576_high_10
Description: NF8576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8576_high_10
NF8576_high_10
[»] chr4 (5 HSPs)
chr4 (1-234)||(33950103-33950336)
chr4 (137-194)||(35157980-35158037)
chr4 (144-193)||(56110814-56110863)
chr4 (142-194)||(7214522-7214574)
chr4 (168-220)||(12077809-12077861)
[»] chr7 (7 HSPs)
chr7 (137-193)||(38143231-38143287)
chr7 (137-196)||(3721098-3721157)
chr7 (137-195)||(11061071-11061129)
chr7 (138-196)||(24146821-24146879)
chr7 (137-195)||(42720885-42720943)
chr7 (143-175)||(2525845-2525877)
chr7 (143-195)||(19206056-19206108)
[»] chr6 (6 HSPs)
chr6 (137-197)||(33001284-33001344)
chr6 (148-195)||(10842538-10842585)
chr6 (144-194)||(26178683-26178733)
chr6 (144-197)||(7086799-7086852)
chr6 (128-193)||(21206891-21206956)
chr6 (143-175)||(32980984-32981016)
[»] chr8 (9 HSPs)
chr8 (137-193)||(33405379-33405435)
chr8 (138-197)||(12606825-12606884)
chr8 (140-193)||(4298884-4298937)
chr8 (137-182)||(44462190-44462235)
chr8 (137-182)||(44469723-44469768)
chr8 (137-197)||(13844591-13844651)
chr8 (105-153)||(14513132-14513180)
chr8 (143-195)||(22651982-22652034)
chr8 (145-197)||(31236580-31236632)
[»] chr2 (1 HSPs)
chr2 (129-197)||(896215-896283)
[»] chr1 (4 HSPs)
chr1 (137-220)||(38078656-38078739)
chr1 (144-197)||(30847722-30847775)
chr1 (137-181)||(2784576-2784620)
chr1 (149-193)||(16164322-16164366)
[»] chr5 (2 HSPs)
chr5 (137-191)||(43564891-43564945)
chr5 (144-196)||(23012410-23012462)
[»] chr3 (6 HSPs)
chr3 (137-195)||(7928456-7928514)
chr3 (144-193)||(24633403-24633452)
chr3 (142-226)||(13807144-13807228)
chr3 (137-193)||(20691327-20691383)
chr3 (137-197)||(45451557-45451617)
chr3 (133-181)||(48202260-48202308)
[»] scaffold0003 (1 HSPs)
scaffold0003 (143-195)||(241600-241652)


Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 33950336 - 33950103
Alignment:
Q  1 actcttaacagattcttaattatgctaatgggctagatcaagccttagctcaatcaagcttaatcaaaataaatttaatgctatggagtacaaacattcc 100  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||  |||||||    
T  33950336 actcttaacagatttttaattatgctaataggctagatcaagccttagctcaatcaagcttaatgaaaataaatttaatgctatgaagtacggacattcc 33950237  T
Q  101 acaaattaggtgtttttcggtgtcggctatgcgttggtgtctgacaccgacacatatgattatattaaattatgtgttttttccaaattattagcagcat 200  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||| ||||  |||||||||||| || |    
T  33950236 acaaattaggtgtttttcggtgtcgggtacgcgttggtgtctgacaccgacacatatgattacattaaattatgtgattttctcaaattattagcggcgt 33950137  T
Q  201 tgaagtgtcagtgttcgtgttatgtctgatgtcc 234  Q
    |||||||||||||||||||||||||||| |||||    
T  33950136 tgaagtgtcagtgttcgtgttatgtctggtgtcc 33950103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 35157980 - 35158037
Alignment:
Q  137 gtgtctgacaccgacacatatgattatattaaattatgtgttttttccaaattattag 194  Q
    ||||| ||||||||||| ||| |||| | ||||||||||| |||||||||||||||||    
T  35157980 gtgtcagacaccgacacttataattacactaaattatgtgatttttccaaattattag 35158037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 56110863 - 56110814
Alignment:
Q  144 acaccgacacatatgattatattaaattatgtgttttttccaaattatta 193  Q
    |||||||||||||| |||||||| ||||||||| | ||| ||||||||||    
T  56110863 acaccgacacatataattatattgaattatgtgatgtttacaaattatta 56110814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 7214522 - 7214574
Alignment:
Q  142 tgacaccgacacatatgattatattaaattatgtgttttttccaaattattag 194  Q
    |||||||||| ||||| |||| ||||||||||||| ||||  |||||||||||    
T  7214522 tgacaccgacgcatataattacattaaattatgtgattttctcaaattattag 7214574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 12077861 - 12077809
Alignment:
Q  168 aattatgtgttttttccaaattattagcagcattgaagtgtcagtgttcgtgt 220  Q
    ||||||||| ||||  |||||||||| ||| ||||| ||||||||||||||||    
T  12077861 aattatgtgattttctcaaattattaacagtattgacgtgtcagtgttcgtgt 12077809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 38143287 - 38143231
Alignment:
Q  137 gtgtctgacaccgacacatatgattatattaaattatgtgttttttccaaattatta 193  Q
    |||||||||||| |||||||| |||| ||||||||||||| ||||| ||||||||||    
T  38143287 gtgtctgacaccaacacatataattacattaaattatgtgattttttcaaattatta 38143231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 3721157 - 3721098
Alignment:
Q  137 gtgtctgacaccgacacatatgattatattaaattatgtgttttttccaaattattagca 196  Q
    ||||| ||||||||||||||| |||||| ||||||||||| ||||  |||||||||||||    
T  3721157 gtgtccgacaccgacacatataattatactaaattatgtgattttctcaaattattagca 3721098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 11061071 - 11061129
Alignment:
Q  137 gtgtctgacaccgacacatatgattatattaaattatgtgttttttccaaattattagc 195  Q
    ||||||||||||||||| | | |||||| ||||||||||| ||||| ||||||||||||    
T  11061071 gtgtctgacaccgacacttgtaattatactaaattatgtgattttttcaaattattagc 11061129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 196
Target Start/End: Complemental strand, 24146879 - 24146821
Alignment:
Q  138 tgtctgacaccgacacatatgattatattaaattatgtgttttttccaaattattagca 196  Q
    |||| ||||||||||||||| |||||||| ||||||||| ||||   ||||||||||||    
T  24146879 tgtcagacaccgacacatataattatattgaattatgtgattttctaaaattattagca 24146821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 42720885 - 42720943
Alignment:
Q  137 gtgtctgacaccgacacatatgattatattaaattatgtgttttttccaaattattagc 195  Q
    ||||| ||||| ||||||||| |||| ||| ||||||||| ||||| ||||||||||||    
T  42720885 gtgtcagacactgacacatataattacatttaattatgtgattttttcaaattattagc 42720943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 2525845 - 2525877
Alignment:
Q  143 gacaccgacacatatgattatattaaattatgt 175  Q
    |||||||||||||||||||||||| ||||||||    
T  2525845 gacaccgacacatatgattatattgaattatgt 2525877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 19206108 - 19206056
Alignment:
Q  143 gacaccgacacatatgattatattaaattatgtgttttttccaaattattagc 195  Q
    ||||||||||||||| |||||| | ||||||||| ||||  ||||||||||||    
T  19206108 gacaccgacacatataattataatgaattatgtgattttctcaaattattagc 19206056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 33001284 - 33001344
Alignment:
Q  137 gtgtctgacaccgacacatatgattatattaaattatgtgttttttccaaattattagcag 197  Q
    ||||| ||||||||||||||| |||| ||| ||||||||| ||||| ||||||||||||||    
T  33001284 gtgtccgacaccgacacatataattacatttaattatgtgattttttcaaattattagcag 33001344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 10842585 - 10842538
Alignment:
Q  148 cgacacatatgattatattaaattatgtgttttttccaaattattagc 195  Q
    ||||||||||||||| | ||||||||||| ||||| ||||||||||||    
T  10842585 cgacacatatgattacactaaattatgtgattttttcaaattattagc 10842538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 26178683 - 26178733
Alignment:
Q  144 acaccgacacatatgattatattaaattatgtgttttttccaaattattag 194  Q
    ||||||||||||||||||| | ||||||||||| ||||  |||||||||||    
T  26178683 acaccgacacatatgattacactaaattatgtgattttatcaaattattag 26178733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 7086852 - 7086799
Alignment:
Q  144 acaccgacacatatgattatattaaattatgtgttttttccaaattattagcag 197  Q
    |||||||||||||| |||| | ||||||||||| ||||  ||||||||||||||    
T  7086852 acaccgacacatataattacactaaattatgtgattttctcaaattattagcag 7086799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 193
Target Start/End: Complemental strand, 21206956 - 21206891
Alignment:
Q  128 tatgcgttggtgtctgacaccgacacatatgattatattaaattatgtgttttttccaaattatta 193  Q
    ||||||| ||||||  |||||||||||||| |||| ||||||||| ||||||| |  |||||||||    
T  21206956 tatgcgtcggtgtccaacaccgacacatataattacattaaattaagtgttttcttaaaattatta 21206891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 175
Target Start/End: Complemental strand, 32981016 - 32980984
Alignment:
Q  143 gacaccgacacatatgattatattaaattatgt 175  Q
    |||||||||||||||||||||||| ||||||||    
T  32981016 gacaccgacacatatgattatattgaattatgt 32980984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 33405379 - 33405435
Alignment:
Q  137 gtgtctgacaccgacacatatgattatattaaattatgtgttttttccaaattatta 193  Q
    ||||| ||||||||||||||| |||| | ||||||||||||||||  ||||||||||    
T  33405379 gtgtccgacaccgacacatataattacactaaattatgtgtttttctcaaattatta 33405435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 12606825 - 12606884
Alignment:
Q  138 tgtctgacaccgacacatatgattatattaaattatgtgttttttccaaattattagcag 197  Q
    |||||||||||||||||||| |||| ||| |||||| || ||||  ||||||||||||||    
T  12606825 tgtctgacaccgacacatataattacattgaattatatgattttctcaaattattagcag 12606884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 4298884 - 4298937
Alignment:
Q  140 tctgacaccgacacatatgattatattaaattatgtgttttttccaaattatta 193  Q
    |||||||||||||| | | |||| ||||||||||||| ||||| ||||||||||    
T  4298884 tctgacaccgacacttgtaattacattaaattatgtgattttttcaaattatta 4298937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 44462190 - 44462235
Alignment:
Q  137 gtgtctgacaccgacacatatgattatattaaattatgtgtttttt 182  Q
    |||||||||||||||||||||||||| ||| |||| ||| ||||||    
T  44462190 gtgtctgacaccgacacatatgattaaattgaattgtgtctttttt 44462235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 44469723 - 44469768
Alignment:
Q  137 gtgtctgacaccgacacatatgattatattaaattatgtgtttttt 182  Q
    |||||||||||||||||||||||||| ||| |||| ||| ||||||    
T  44469723 gtgtctgacaccgacacatatgattaaattgaattgtgtctttttt 44469768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 13844591 - 13844651
Alignment:
Q  137 gtgtctgacaccgacacatatgattatattaaattatgtgttttttccaaattattagcag 197  Q
    ||||| ||||||||||||||| |||| | | ||||||||| ||||  ||||||||||||||    
T  13844591 gtgtccgacaccgacacatataattacactcaattatgtgattttctcaaattattagcag 13844651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 14513132 - 14513180
Alignment:
Q  105 attaggtgtttttcggtgtcggctatgcgttggtgtctgacaccgacac 153  Q
    ||||||||| || |||||||||  |||||| ||||||||||||||||||    
T  14513132 attaggtgtgttccggtgtcggacatgcgtcggtgtctgacaccgacac 14513180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 22652034 - 22651982
Alignment:
Q  143 gacaccgacacatatgattatattaaattatgtgttttttccaaattattagc 195  Q
    ||||||||||| | | |||||||| ||||||||| ||||| ||||||||||||    
T  22652034 gacaccgacacttgtaattatattgaattatgtgattttttcaaattattagc 22651982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 31236580 - 31236632
Alignment:
Q  145 caccgacacatatgattatattaaattatgtgttttttccaaattattagcag 197  Q
    ||||||||||||| |||| ||| ||||||||| ||||  ||||||||||||||    
T  31236580 caccgacacatataattacattgaattatgtgattttctcaaattattagcag 31236632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 896283 - 896215
Alignment:
Q  129 atgcgttggtgtctgacaccgacacatatgattatattaaattatgtgttttttccaaattattagcag 197  Q
    ||||||||||||| ||| |||||||||||||||| ||| || |||||| ||||  |||| |||||||||    
T  896283 atgcgttggtgtccgacgccgacacatatgattacattgaaatatgtgattttctcaaactattagcag 896215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 220
Target Start/End: Original strand, 38078656 - 38078739
Alignment:
Q  137 gtgtctgacaccgacacatatgattatattaaattatgtgttttttccaaattattagcagcattgaagtgtcagtgttcgtgt 220  Q
    ||||| ||||||||||| | | |||| ||| ||||||||| ||||| |||||||||||| |  | || ||||||||||||||||    
T  38078656 gtgtccgacaccgacacttgtaattacattgaattatgtgattttttcaaattattagctgtgtcgacgtgtcagtgttcgtgt 38078739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 30847722 - 30847775
Alignment:
Q  144 acaccgacacatatgattatattaaattatgtgttttttccaaattattagcag 197  Q
    |||| |||||||||||||| ||| ||||||||  ||||| ||||||||||||||    
T  30847722 acactgacacatatgattacattgaattatgtcattttttcaaattattagcag 30847775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 2784620 - 2784576
Alignment:
Q  137 gtgtctgacaccgacacatatgattatattaaattatgtgttttt 181  Q
    ||||||||||||||||||||| |||||| | ||||||||| ||||    
T  2784620 gtgtctgacaccgacacatataattatactcaattatgtgatttt 2784576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 193
Target Start/End: Original strand, 16164322 - 16164366
Alignment:
Q  149 gacacatatgattatattaaattatgtgttttttccaaattatta 193  Q
    ||||||||| |||| ||||||||||||| ||||| ||||||||||    
T  16164322 gacacatataattacattaaattatgtgattttttcaaattatta 16164366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 43564945 - 43564891
Alignment:
Q  137 gtgtctgacaccgacacatatgattatattaaattatgtgttttttccaaattat 191  Q
    ||||| ||||||||||| ||| |||| | ||||||||||| ||||||||||||||    
T  43564945 gtgtccgacaccgacacttataattacactaaattatgtgatttttccaaattat 43564891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 23012410 - 23012462
Alignment:
Q  144 acaccgacacatatgattatattaaattatgtgttttttccaaattattagca 196  Q
    |||||||||||||| |||| |||||||||| || ||||  |||||||||||||    
T  23012410 acaccgacacatataattacattaaattatatgattttctcaaattattagca 23012462  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 195
Target Start/End: Complemental strand, 7928514 - 7928456
Alignment:
Q  137 gtgtctgacaccgacacatatgattatattaaattatgtgttttttccaaattattagc 195  Q
    ||||| ||||||||||||||| |||| | | ||||||||| ||||| ||||||||||||    
T  7928514 gtgtccgacaccgacacatataattacactgaattatgtgattttttcaaattattagc 7928456  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 24633403 - 24633452
Alignment:
Q  144 acaccgacacatatgattatattaaattatgtgttttttccaaattatta 193  Q
    |||||||||||||| |||| ||| ||||| ||| ||||||||||||||||    
T  24633403 acaccgacacatataattacattgaattacgtgatttttccaaattatta 24633452  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 13807228 - 13807144
Alignment:
Q  142 tgacaccgacacatatgattatattaaattatgtgttttttccaaattattagcagcattgaagtgtcagtgttcgtgttatgtc 226  Q
    |||||||||||||||| |||||||| ||||||||| ||||  |||||| ||| |||  |||  |||| ||| ||||||| |||||    
T  13807228 tgacaccgacacatattattatattgaattatgtgattttctcaaattgttatcagtgttggcgtgttagttttcgtgtcatgtc 13807144  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 20691383 - 20691327
Alignment:
Q  137 gtgtctgacaccgacacatatgattatattaaattatgtgttttttccaaattatta 193  Q
    |||||||||||||||||||||||||| | | ||||||||  ||||  ||||||||||    
T  20691383 gtgtctgacaccgacacatatgattacactgaattatgtcattttctcaaattatta 20691327  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 45451617 - 45451557
Alignment:
Q  137 gtgtctgacaccgacacatatgattatattaaattatgtgttttttccaaattattagcag 197  Q
    ||||| ||||||||||||||| |||||| | || |||||| ||||  ||||||||||||||    
T  45451617 gtgtccgacaccgacacatattattatactgaagtatgtgattttctcaaattattagcag 45451557  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 48202260 - 48202308
Alignment:
Q  133 gttggtgtctgacaccgacacatatgattatattaaattatgtgttttt 181  Q
    |||||||| |||||| ||||||||| |||| ||||||||||||| ||||    
T  48202260 gttggtgtttgacacagacacatataattacattaaattatgtgatttt 48202308  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 241652 - 241600
Alignment:
Q  143 gacaccgacacatatgattatattaaattatgtgttttttccaaattattagc 195  Q
    |||||||||||  || |||| | ||||||||||| ||||||||||||||||||    
T  241652 gacaccgacactcataattacactaaattatgtgatttttccaaattattagc 241600  T

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