View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8576_high_5 (Length: 412)
Name: NF8576_high_5
Description: NF8576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8576_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 12 - 396
Target Start/End: Complemental strand, 13871067 - 13870683
Alignment:
| Q |
12 |
agagacggatgaagtgatgtggcttcaaatcatgtcaattctcaagagccttctatggaaaagtctcgggactggtcttacaaccctactgacttgtctt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13871067 |
agagacggatgaagtgatgtggcttcaaatcatgttaattctcaagagccttctatggaaaagtctcgggactggccttacaaccctactgacttgtctt |
13870968 |
T |
|
| Q |
112 |
ctaaccttcaccatggtgtatcgttgtcggctgtggagtccacggcacctagtcacattgtctggtctgaactcaatgaggtcattgcacttcatgaaga |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13870967 |
ctaaccttcaccatggtgtatcgttgtcggctgtggagtccacggcacctagtcacattgtctggtctgaactcaatgaggtcattggacttcatgaaga |
13870868 |
T |
|
| Q |
212 |
cacaaccgcagctttataagacggtccttgaagttttggagagggacaagaaagctcaacagcgagtggatcaattctatgaacaaatgatcgatatgat |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
13870867 |
cacaaccgcagctttataagacggtccttgaagttttagagagggccaagaaagctcaacaacgagtagatcaattctatgaacaaatgatcgatatggt |
13870768 |
T |
|
| Q |
312 |
ggaacaattgaaacaacgtatgacatctcaaaagcgacaatcaggatgtatagtgcttctagttgtgtgagtccaccatcgcaaa |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13870767 |
ggaacaattgaaacaacgtatgacatctcaaaagcgacaatcaggatgtatagtgcttctagttgtgcgagtccaccatcgcaaa |
13870683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 12 - 396
Target Start/End: Complemental strand, 14011192 - 14010808
Alignment:
| Q |
12 |
agagacggatgaagtgatgtggcttcaaatcatgtcaattctcaagagccttctatggaaaagtctcgggactggtcttacaaccctactgacttgtctt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14011192 |
agagacggatgaagtgatgtggcttcaaatcatgttaattctcaagagccttctatggaaaagtctcgggactggccttacaaccctactgacttgtctt |
14011093 |
T |
|
| Q |
112 |
ctaaccttcaccatggtgtatcgttgtcggctgtggagtccacggcacctagtcacattgtctggtctgaactcaatgaggtcattgcacttcatgaaga |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14011092 |
ctaaccttcaccatggtgtatcgttgtcggctgtggagtccacggcacctagtcacattgtctggtctgaactcaatgaggtcattggacttcatgaaga |
14010993 |
T |
|
| Q |
212 |
cacaaccgcagctttataagacggtccttgaagttttggagagggacaagaaagctcaacagcgagtggatcaattctatgaacaaatgatcgatatgat |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
14010992 |
cacaaccgcagctttataagacggtccttgaagttttagagagggccaagaaagctcaacaacgagtagatcaattctatgaacaaatgatcgatatggt |
14010893 |
T |
|
| Q |
312 |
ggaacaattgaaacaacgtatgacatctcaaaagcgacaatcaggatgtatagtgcttctagttgtgtgagtccaccatcgcaaa |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14010892 |
ggaacaattgaaacaacgtatgacatctcaaaagcgacaatcaggatgtatagtgcttctagttgtgcgagtccaccatcgcaaa |
14010808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University