View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8576_low_1 (Length: 824)

Name: NF8576_low_1
Description: NF8576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8576_low_1
NF8576_low_1
[»] chr5 (3 HSPs)
chr5 (7-681)||(14839543-14840214)
chr5 (705-802)||(33083989-33084086)
chr5 (58-96)||(42192283-42192321)
[»] chr3 (7 HSPs)
chr3 (705-824)||(32613966-32614085)
chr3 (711-824)||(32559009-32559122)
chr3 (702-824)||(32615502-32615624)
chr3 (705-824)||(32559738-32559857)
chr3 (705-761)||(41881573-41881629)
chr3 (705-775)||(44458678-44458748)
chr3 (705-761)||(31017665-31017721)
[»] chr2 (9 HSPs)
chr2 (705-804)||(9662079-9662178)
chr2 (705-761)||(16143516-16143572)
chr2 (705-802)||(9660928-9661026)
chr2 (705-779)||(44097253-44097327)
chr2 (706-804)||(6842799-6842897)
chr2 (705-775)||(6844002-6844073)
chr2 (705-761)||(44095438-44095494)
chr2 (707-752)||(7317475-7317520)
chr2 (706-761)||(22053208-22053263)
[»] chr8 (2 HSPs)
chr8 (706-763)||(27339099-27339156)
chr8 (707-761)||(45448410-45448464)
[»] chr7 (2 HSPs)
chr7 (705-761)||(12178566-12178622)
chr7 (705-761)||(11669924-11669980)
[»] chr6 (3 HSPs)
chr6 (706-762)||(1443501-1443557)
chr6 (705-746)||(28049065-28049106)
chr6 (50-96)||(19369816-19369862)
[»] scaffold0280 (1 HSPs)
scaffold0280 (705-751)||(12215-12261)
[»] chr1 (4 HSPs)
chr1 (705-759)||(24437157-24437211)
chr1 (705-761)||(50315401-50315457)
chr1 (705-761)||(46604521-46604577)
chr1 (719-761)||(10708067-10708109)
[»] chr4 (4 HSPs)
chr4 (705-759)||(38157103-38157157)
chr4 (705-758)||(21354699-21354752)
chr4 (705-778)||(33607551-33607624)
chr4 (704-744)||(50094448-50094488)
[»] scaffold1176 (1 HSPs)
scaffold1176 (706-762)||(2135-2191)


Alignment Details
Target: chr5 (Bit Score: 575; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 7 - 681
Target Start/End: Complemental strand, 14840214 - 14839543
Alignment:
Q  7 gaagcagagacaaagacatgggcaccggacattacactgacactgacatggataaaattttgagacaatggcataattcaaagtaatcacttgtgttagt 106  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14840214 gaagcacagacaaagacatgggcaccggacatgacactgacactgacatggataaaattttgagacaatggcataattcaaagtaatcacttgtgttagt 14840115  T
Q  107 gttgtgccggtgtcagacaccagacactctttcgatcacaagtgttaatgctacataatacaactcaaaattaaatgtatgcaaattaatgggttgtacc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14840114 gttgtgccggtgtcagacaccagacactctttcgatcacaagtgttaatgctacataatacaactcaaaattaaatgtatgcaaattaatgggttgtacc 14840015  T
Q  207 taatttttgaatctgaactaaaacacatgtaaccaaactagcccagattaatcaaactagctcccagcttaatggggtaagaaaaatttgatctttttga 306  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14840014 taatttttgaatctgaactaaaacacatgtaaccaaactagcccggattaatcaaactagctcccagcttaatggggtaagaaaaatttgatctttttga 14839915  T
Q  307 taattctagatcaaatattcagagctagggcaaaaaatgtttaaaatatcaaatcagaacaaagacaacaataagaatcaaatatatataccaactttcg 406  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  14839914 taattctagatcaaatattcaaagctagggcaaaaaatgtttaaaatatcaaatcagaacaaagacaacaataagaatcaaata--tataccaactttcg 14839817  T
Q  407 aattcattcaaacccacttcatattttctaaatgcaattcacagaaagaaaattaaaaccctaagattggaacttgaatcaacaaaattttgaattaann 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||      
T  14839816 aattcattcaaacccacttcatattttctaaatgcaattcacagaaagaaaattaaaaccctcagattggaacttgaatcaacaaaattttgaattaatt 14839717  T
Q  507 nnnnnaacaatagaatcattaacacgagagttgagagtgatgaaaagaggaaaggaattgaaattttacctcaatgtgaaatttgggtatgagagcgagc 606  Q
         |||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  14839716 tttttaacattagaatcgttaacacgagagttgagagtgatgaaaaggggaaaggaattgaaattttacctgaatatgaaatttgggtatgagagcgagc 14839617  T
Q  607 gaaaacgagag---tgtagtagatgaaaccagtgaagctccgttagttagtttaactttggattaacatgtaaaaaat 681  Q
    |||||||||||   |||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||    
T  14839616 gaaaacgagagtgttgtagtagatgaaaccagtgaagctcc----gttagtttaactttggattaacatgtaaaaaat 14839543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 705 - 802
Target Start/End: Complemental strand, 33084086 - 33083989
Alignment:
Q  705 tgtaagttgttaactttttggttttagtctctaacgttaac-ttctgttcaaaaaacgtgttgcaggcaaacggaaacacgcgtggcgaaggccgagtt 802  Q
    |||||||||||| | |||||||||||||| ||||||||||| ||||||| |||||||  ||||| |||||||| |||| |  ||||||||||| |||||    
T  33084086 tgtaagttgttagcattttggttttagtcactaacgttaactttctgtt-aaaaaacacgttgctggcaaacgaaaacgcatgtggcgaaggctgagtt 33083989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 42192283 - 42192321
Alignment:
Q  58 ataaaattttgagacaatggcataattcaaagtaatcac 96  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  42192283 ataaaattttgagacaatgacataattcaatgtaatcac 42192321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 7e-42; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 705 - 824
Target Start/End: Original strand, 32613966 - 32614085
Alignment:
Q  705 tgtaagttgttaactttttggttttagtctctaacgttaacttctgttcaaaaaacgtgttgcaggcaaacggaaacacgcgtggcgaaggccgagttgg 804  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||    
T  32613966 tgtaagttgttaactttttggttttagtccctaacgttaacttctgttcaaaaaacgtgttgctggcaaacggaaacacgcatggcgaaggctgagttgg 32614065  T
Q  805 agttagtggcttgcgtggcc 824  Q
     || ||||| || |||||||    
T  32614066 cgtcagtggtttacgtggcc 32614085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 711 - 824
Target Start/End: Original strand, 32559009 - 32559122
Alignment:
Q  711 ttgttaactttttggttttagtctctaacgttaacttctgttcaaaaaacgtgttgcaggcaaacggaaacacgcgtggcgaaggccgagttggagttag 810  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||| ||||||||||||||||| |||||||||| ||||||| |||||    
T  32559009 ttgttaactttttggttttagtccctaacgttaacttctgttcaaaaaatgcgttgctggcaaacggaaacacgcatggcgaaggctgagttggcgttag 32559108  T
Q  811 tggcttgcgtggcc 824  Q
    |||||| |||||||    
T  32559109 tggcttacgtggcc 32559122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 702 - 824
Target Start/End: Complemental strand, 32615624 - 32615502
Alignment:
Q  702 tcatgtaagttgttaactttttggttttagtctctaacgttaacttctgttcaaaaaacgtgttgcaggcaaacggaaacacgcgtggcgaaggccgagt 801  Q
    ||||||||||||||||||||||| |||||||| ||||||| |||||| ||| |||||||  ||||| |||||||||||||||||||||||||||| ||||    
T  32615624 tcatgtaagttgttaactttttgattttagtccctaacgtaaacttccgttaaaaaaacacgttgctggcaaacggaaacacgcgtggcgaaggctgagt 32615525  T
Q  802 tggagttagtggcttgcgtggcc 824  Q
    ||| ||||||||||| |||||||    
T  32615524 tggcgttagtggcttacgtggcc 32615502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 705 - 824
Target Start/End: Complemental strand, 32559857 - 32559738
Alignment:
Q  705 tgtaagttgttaactttttggttttagtctctaacgttaacttctgttcaaaaaacgtgttgcaggcaaacggaaacacgcgtggcgaaggccgagttgg 804  Q
    ||||||||||||||||||| ||||||||   |||||| |||||| ||| |||||||||||||| |||||||| ||| || |||||||||||| |||||||    
T  32559857 tgtaagttgttaactttttagttttagttcataacgtaaacttccgttaaaaaaacgtgttgctggcaaacgaaaatacacgtggcgaaggctgagttgg 32559758  T
Q  805 agttagtggcttgcgtggcc 824  Q
     ||||||||||| |||||||    
T  32559757 cgttagtggcttacgtggcc 32559738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 705 - 761
Target Start/End: Complemental strand, 41881629 - 41881573
Alignment:
Q  705 tgtaagttgttaactttttggttttagtctctaacgttaacttctgttcaaaaaacg 761  Q
    |||||||||||||| |||||||||||||| |||||||||||||| |||  |||||||    
T  41881629 tgtaagttgttaaccttttggttttagtccctaacgttaacttccgttacaaaaacg 41881573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 705 - 775
Target Start/End: Original strand, 44458678 - 44458748
Alignment:
Q  705 tgtaagttgttaactttttggttttagtctctaacgttaacttctgttcaaaaaacgtgttgcaggcaaac 775  Q
    |||||||||||||| ||||  |||||||| |||||||||||||| |||  ||||||| ||||| |||||||    
T  44458678 tgtaagttgttaaccttttaattttagtccctaacgttaacttccgttacaaaaacgcgttgctggcaaac 44458748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 705 - 761
Target Start/End: Complemental strand, 31017721 - 31017665
Alignment:
Q  705 tgtaagttgttaactttttggttttagtctctaacgttaacttctgttcaaaaaacg 761  Q
    ||||||||||||| |||||| |||| ||| ||||||| |||||||||| ||||||||    
T  31017721 tgtaagttgttaattttttgattttggtccctaacgtcaacttctgttaaaaaaacg 31017665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 2e-27; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 705 - 804
Target Start/End: Complemental strand, 9662178 - 9662079
Alignment:
Q  705 tgtaagttgttaactttttggttttagtctctaacgttaacttctgttcaaaaaacgtgttgcaggcaaacggaaacacgcgtggcgaaggccgagttgg 804  Q
    ||||||||||||| |||||||||||| || || ||||||||||||||| |||||||||||||| |||||||||| |||| |||||||||||| |||||||    
T  9662178 tgtaagttgttaattttttggttttaatccctgacgttaacttctgttaaaaaaacgtgttgctggcaaacggagacacacgtggcgaaggctgagttgg 9662079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 705 - 761
Target Start/End: Complemental strand, 16143572 - 16143516
Alignment:
Q  705 tgtaagttgttaactttttggttttagtctctaacgttaacttctgttcaaaaaacg 761  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  16143572 tgtaagttgttaactttttggttttagtccctaacgttaacttctgttaaaaaaacg 16143516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 705 - 802
Target Start/End: Original strand, 9660928 - 9661026
Alignment:
Q  705 tgtaagttgttaactttttggttttagtctctaacgttaac-ttctgttcaaaaaacgtgttgcaggcaaacggaaacacgcgtggcgaaggccgagtt 802  Q
    |||||||||||| |||||||||||||||  ||||||||||| ||||||| |||||||| ||||| |||||||| | ||||  ||||||||||| |||||    
T  9660928 tgtaagttgttagctttttggttttagttcctaacgttaactttctgttaaaaaaacgcgttgctggcaaacgaagacacatgtggcgaaggctgagtt 9661026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 705 - 779
Target Start/End: Complemental strand, 44097327 - 44097253
Alignment:
Q  705 tgtaagttgttaactttttggttttagtctctaacgttaacttctgttcaaaaaacgtgttgcaggcaaacggaa 779  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||  ||||||| ||||  |||||||||||    
T  44097327 tgtaagttgttaaccttttggttttagtccctaacgttaacttctgttacaaaaacgcgttgttggcaaacggaa 44097253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 706 - 804
Target Start/End: Original strand, 6842799 - 6842897
Alignment:
Q  706 gtaagttgttaactttttggttttagtctctaacgttaacttctgttcaaaaaacgtgttgcaggcaaacggaaacacgcgtggcgaaggccgagttgg 804  Q
    |||||||||||| |||||||||||| ||  | ||||||||||||||| |||||||| ||||| | ||||  || |||| |||||||||||| |||||||    
T  6842799 gtaagttgttaattttttggttttaatccttgacgttaacttctgttaaaaaaacgcgttgctgacaaatagagacacacgtggcgaaggctgagttgg 6842897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 705 - 775
Target Start/End: Complemental strand, 6844073 - 6844002
Alignment:
Q  705 tgtaagttgttaactttttggttttagtctctaacgttaac-ttctgttcaaaaaacgtgttgcaggcaaac 775  Q
    |||||||||||| |||||||||||||||| ||||||||||| ||||||| |||||||  ||||| |||||||    
T  6844073 tgtaagttgttagctttttggttttagtccctaacgttaactttctgttaaaaaaacacgttgctggcaaac 6844002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 705 - 761
Target Start/End: Original strand, 44095438 - 44095494
Alignment:
Q  705 tgtaagttgttaactttttggttttagtctctaacgttaacttctgttcaaaaaacg 761  Q
    |||||||||||||| |||||||||||||| |||||||||||||| |||  |||||||    
T  44095438 tgtaagttgttaaccttttggttttagtccctaacgttaacttccgttacaaaaacg 44095494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 707 - 752
Target Start/End: Original strand, 7317475 - 7317520
Alignment:
Q  707 taagttgttaactttttggttttagtctctaacgttaacttctgtt 752  Q
    ||||||||||||||||||||||| ||| |||| |||||||||||||    
T  7317475 taagttgttaactttttggttttggtccctaatgttaacttctgtt 7317520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 706 - 761
Target Start/End: Original strand, 22053208 - 22053263
Alignment:
Q  706 gtaagttgttaactttttggttttagtctctaacgttaacttctgttcaaaaaacg 761  Q
    ||||||| | ||| |||||||||||||| ||||||||||||||||||  |||||||    
T  22053208 gtaagttataaacgttttggttttagtccctaacgttaacttctgttacaaaaacg 22053263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 706 - 763
Target Start/End: Complemental strand, 27339156 - 27339099
Alignment:
Q  706 gtaagttgttaactttttggttttagtctctaacgttaacttctgttcaaaaaacgtg 763  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27339156 gtaagttgttaactttttggttttagtctctaacgttaacttctgttaaaaaaacgtg 27339099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 707 - 761
Target Start/End: Complemental strand, 45448464 - 45448410
Alignment:
Q  707 taagttgttaactttttggttttagtctctaacgttaacttctgttcaaaaaacg 761  Q
    |||||||| ||| |||||||||||||||||||||||||| ||||||  |||||||    
T  45448464 taagttgtgaacattttggttttagtctctaacgttaacctctgttagaaaaacg 45448410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 705 - 761
Target Start/End: Original strand, 12178566 - 12178622
Alignment:
Q  705 tgtaagttgttaactttttggttttagtctctaacgttaacttctgttcaaaaaacg 761  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  12178566 tgtaagttgttaactttttggttttagtccctaacgttaacttctgttaaaaaaacg 12178622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 705 - 761
Target Start/End: Original strand, 11669924 - 11669980
Alignment:
Q  705 tgtaagttgttaactttttggttttagtctctaacgttaacttctgttcaaaaaacg 761  Q
    |||||||||||||| ||||| |||||||| |||||||||||||| |||  |||||||    
T  11669924 tgtaagttgttaaccttttgattttagtccctaacgttaacttccgttacaaaaacg 11669980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 706 - 762
Target Start/End: Original strand, 1443501 - 1443557
Alignment:
Q  706 gtaagttgttaactttttggttttagtctctaacgttaacttctgttcaaaaaacgt 762  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||    
T  1443501 gtaagttgttaactttttggttttagtccctaacgttaacttttgttaaaaaaacgt 1443557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 705 - 746
Target Start/End: Original strand, 28049065 - 28049106
Alignment:
Q  705 tgtaagttgttaactttttggttttagtctctaacgttaact 746  Q
    |||||||||||||| |||||||||||||| ||||||||||||    
T  28049065 tgtaagttgttaaccttttggttttagtccctaacgttaact 28049106  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 19369816 - 19369862
Alignment:
Q  50 tgacatggataaaattttgagacaatggcataattcaaagtaatcac 96  Q
    ||||| |||||||||||||||| |||| |||||||||| ||||||||    
T  19369816 tgacacggataaaattttgagaaaatgacataattcaatgtaatcac 19369862  T

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Target: scaffold0280 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 705 - 751
Target Start/End: Original strand, 12215 - 12261
Alignment:
Q  705 tgtaagttgttaactttttggttttagtctctaacgttaacttctgt 751  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||    
T  12215 tgtaagttgttaaccttttggttttagtccctaacgttaacttctgt 12261  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 705 - 759
Target Start/End: Original strand, 24437157 - 24437211
Alignment:
Q  705 tgtaagttgttaactttttggttttagtctctaacgttaacttctgttcaaaaaa 759  Q
    ||||| ||||||||||||||||||||||| ||||||||||||| |||| ||||||    
T  24437157 tgtaaattgttaactttttggttttagtccctaacgttaacttttgttaaaaaaa 24437211  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 705 - 761
Target Start/End: Original strand, 50315401 - 50315457
Alignment:
Q  705 tgtaagttgttaactttttggttttagtctctaacgttaacttctgttcaaaaaacg 761  Q
    |||||||||||||| |||||||||||||| |||||||||||||| |||  |||||||    
T  50315401 tgtaagttgttaaccttttggttttagtccctaacgttaacttccgttacaaaaacg 50315457  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 705 - 761
Target Start/End: Original strand, 46604521 - 46604577
Alignment:
Q  705 tgtaagttgttaactttttggttttagtctctaacgttaacttctgttcaaaaaacg 761  Q
    |||||||||| ||| |||||||||||||| ||||||||||| ||||||  |||||||    
T  46604521 tgtaagttgtgaacattttggttttagtccctaacgttaacctctgttagaaaaacg 46604577  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 719 - 761
Target Start/End: Original strand, 10708067 - 10708109
Alignment:
Q  719 tttttggttttagtctctaacgttaacttctgttcaaaaaacg 761  Q
    ||||||||||||||||||||||||||| ||||||  |||||||    
T  10708067 tttttggttttagtctctaacgttaacctctgttagaaaaacg 10708109  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 705 - 759
Target Start/End: Original strand, 38157103 - 38157157
Alignment:
Q  705 tgtaagttgttaactttttggttttagtctctaacgttaacttctgttcaaaaaa 759  Q
    ||||||||||||| ||||||||||| ||||||||| | |||||||||| ||||||    
T  38157103 tgtaagttgttaattttttggttttggtctctaacatcaacttctgttaaaaaaa 38157157  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 705 - 758
Target Start/End: Complemental strand, 21354752 - 21354699
Alignment:
Q  705 tgtaagttgttaactttttggttttagtctctaacgttaacttctgttcaaaaa 758  Q
    |||||||||||||||||||||||||||||  ||||||||| |||| || |||||    
T  21354752 tgtaagttgttaactttttggttttagtccttaacgttaatttctattaaaaaa 21354699  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 705 - 778
Target Start/End: Original strand, 33607551 - 33607624
Alignment:
Q  705 tgtaagttgttaactttttggttttagtctctaacgttaacttctgttcaaaaaacgtgttgcaggcaaacgga 778  Q
    |||||||||| ||| |||||||||||||| ||||||||||| ||||||  |||||||  | || ||||||||||    
T  33607551 tgtaagttgtaaacattttggttttagtccctaacgttaacatctgttagaaaaacgcttagctggcaaacgga 33607624  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 704 - 744
Target Start/End: Complemental strand, 50094488 - 50094448
Alignment:
Q  704 atgtaagttgttaactttttggttttagtctctaacgttaa 744  Q
    |||||||||||||||||||| |||||||||||||| |||||    
T  50094488 atgtaagttgttaacttttttgttttagtctctaatgttaa 50094448  T

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Target: scaffold1176 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 706 - 762
Target Start/End: Original strand, 2135 - 2191
Alignment:
Q  706 gtaagttgttaactttttggttttagtctctaacgttaacttctgttcaaaaaacgt 762  Q
    ||||||| | ||| |||||||||||||| ||||||||||||||||||  ||||||||    
T  2135 gtaagttataaacgttttggttttagtccctaacgttaacttctgttacaaaaacgt 2191  T

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