View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8576_low_12 (Length: 289)
Name: NF8576_low_12
Description: NF8576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8576_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 7325817 - 7325997
Alignment:
| Q |
18 |
cataatggtacaactatagaaaccttataagattgcatgctctaaatgagggcaagaattttctcaagaggacggagaagcacacttc-ggggtagaaga |
116 |
Q |
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| T |
7325817 |
cataatggtacaattatggaaaccttataaagttgcatgctctaaatgagggcaagaattttctcaagaggacggagaagcacacttcaggggtagaaga |
7325916 |
T |
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| Q |
117 |
aggtgtggtatctatcttcttgnnnnnnnnnnnnnattaaggtccaaattaattgtcgtaaaggaaaaataaataaacctatttgtatt |
205 |
Q |
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| T |
7325917 |
cggtgtggtatctatcttctt--------ttttttactaaggtccaaattaattgtcgttaaggaaaaataaataaacctatttgtatt |
7325997 |
T |
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Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 7325994 - 7326055
Alignment:
| Q |
228 |
tattattcttgtatttaaggaagtgaaagaaactagttggttcgaatggtaagaaattagat |
289 |
Q |
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| T |
7325994 |
tattattcttgtatttaaggaagtgaaaaaaactagttggttcgaatggtaagaaattagat |
7326055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 51791469 - 51791528
Alignment:
| Q |
189 |
ataaacctatttgtatttccaagtttattataacaaagttattattcttgtatttaagga |
248 |
Q |
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| T |
51791469 |
ataaacctatttgtattttcaagtttatcataactaagttattattctaggatttaagga |
51791528 |
T |
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