View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8576_low_13 (Length: 275)
Name: NF8576_low_13
Description: NF8576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8576_low_13 |
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| [»] scaffold0110 (2 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 11196 - 11447
Alignment:
| Q |
18 |
gatatattggcatgatgctttggagcctttttatcttttgcttttacaaaaatatccctaaatgcataaagttatcagtttttaaaagtttctcccaatt |
117 |
Q |
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| T |
11196 |
gatatattggcatgatgctttggagcctttttatcttttgcttttacaaaaatatcccaaaatgcataaagttttcggtttttaaaagtttctcccaatt |
11295 |
T |
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| Q |
118 |
taatgtgatggtccaatgagaggcatagataacccaacctaagattccattaaaaataaataaatagcccaacctaagatgtcatttttgtacacctata |
217 |
Q |
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| T |
11296 |
taatgtgatggtcgaatgagaggcatagataacccaacctaagattccattaaaaataaataaatagcccaacctaagatgtcatttttgtacacctata |
11395 |
T |
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| Q |
218 |
gacccatagatactgaggtacgagcttaggagaattgcttttttcacattga |
269 |
Q |
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| T |
11396 |
gacccatagatacataggtatgagcttaggagaattgcttttttcacattga |
11447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 18933 - 19184
Alignment:
| Q |
18 |
gatatattggcatgatgctttggagcctttttatcttttgcttttacaaaaatatccctaaatgcataaagttatcagtttttaaaagtttctcccaatt |
117 |
Q |
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| T |
18933 |
gatatattggcatgatgctttggagcctttttatcttttgcttttacaaaaatatcccaaaatgcataaagttttcggtttttaaaagtttctcccaatt |
19032 |
T |
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| Q |
118 |
taatgtgatggtccaatgagaggcatagataacccaacctaagattccattaaaaataaataaatagcccaacctaagatgtcatttttgtacacctata |
217 |
Q |
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| T |
19033 |
taatgtgatggtcgaatgagaggcatagataacccaacctaagattccattaaaaataaataaatagcccaacctaagatgtcatttttgtacacctata |
19132 |
T |
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| Q |
218 |
gacccatagatactgaggtacgagcttaggagaattgcttttttcacattga |
269 |
Q |
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| T |
19133 |
gacccatagatacataggtatgagcttaggagaattgcttttttcacattga |
19184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 7019725 - 7019775
Alignment:
| Q |
21 |
atattggcatgatgctttggagcctttttatcttttgcttttacaaaaata |
71 |
Q |
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| T |
7019725 |
atattggcatggtgttttggagcttttttcccttttgcttttacaaaaata |
7019775 |
T |
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