View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8576_low_16 (Length: 254)
Name: NF8576_low_16
Description: NF8576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8576_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 40569014 - 40568775
Alignment:
| Q |
1 |
tgtcctcacccttcacccttaaacaccgttctacaataagagcaacctcctttagttgctcaatatcagcattatctatacttttgtccaaaatatgaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40569014 |
tgtcctcacccttcacccttaaacaccgttctacaataagagcaacctcctttagttgctcaatatcagcattatctatacttttgtccaaaatatgaag |
40568915 |
T |
|
| Q |
101 |
taaccgaccctctttcattgaagaaaccaagtatgcggcaaggtttctatcaacctctggcctgcccaaagatagcgccttctttcctgtcagtagctct |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40568914 |
taaccgaccctctttcattgaagaaacaaagtacgcggcaaggtttctatcaacctctggcctgcccaaagatagtgccttctttcctgtcagtagctct |
40568815 |
T |
|
| Q |
201 |
gctaggaccaccccaaaactataaacatcactcttctctg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40568814 |
gctaggaccaccccaaaactataaacatcactcttctctg |
40568775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 40573615 - 40573376
Alignment:
| Q |
1 |
tgtcctcacccttcacccttaaacaccgttctacaataagagcaacctcctttagttgctcaatatcagcattatctatacttttgtccaaaatatgaag |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||| | |||||||| |||||||||||||||| || | ||||||| ||||||||||||||||||| |
|
|
| T |
40573615 |
tgtcctcgcccttcacccttaaacaccgttctgcaatatgggcaacctcttttagttgctcaatatttgcctcatctatatttttgtccaaaatatgaag |
40573516 |
T |
|
| Q |
101 |
taaccgaccctctttcattgaagaaaccaagtatgcggcaaggtttctatcaacctctggcctgcccaaagatagcgccttctttcctgtcagtagctct |
200 |
Q |
| |
|
||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||||||||||||||| |
|
|
| T |
40573515 |
taaccgaccctgtttcatcgaagaaacaaagtatgcggcaaggtttctatcaacctcaggcctcccaaaagatagcgctttctttcctgtcagtagctct |
40573416 |
T |
|
| Q |
201 |
gctaggaccaccccaaaactataaacatcactcttctctg |
240 |
Q |
| |
|
|||||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
40573415 |
gctaggactactccaaatctataaacatcactcttctctg |
40573376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 40580072 - 40579833
Alignment:
| Q |
1 |
tgtcctcacccttcacccttaaacaccgttctacaataagagcaacctcctttagttgctcaatatcagcattatctatacttttgtccaaaatatgaag |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||| |||||||| || ||||||||||||| | | ||||||| ||||||||||||||||||| |
|
|
| T |
40580072 |
tgtcctctcccttcacccttaaacaccgttctgcaatatcggcaacctctttaagttgctcaatatttgtctcatctatatttttgtccaaaatatgaag |
40579973 |
T |
|
| Q |
101 |
taaccgaccctctttcattgaagaaaccaagtatgcggcaaggtttctatcaacctctggcctgcccaaagatagcgccttctttcctgtcagtagctct |
200 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||| |||||||||||| |||||||||||||| |||||||| ||||||||||| || ||||||||| |
|
|
| T |
40579972 |
taaccgaccctgtttcattgaagaaacaaagtatgcggaaaggtttctatctacctctggcctgccaaaagatagtgccttctttcccgttagtagctct |
40579873 |
T |
|
| Q |
201 |
gctaggaccaccccaaaactataaacatcactcttctctg |
240 |
Q |
| |
|
|||| ||| || ||||| |||||||||||||||||||||| |
|
|
| T |
40579872 |
gctatgactactccaaatctataaacatcactcttctctg |
40579833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 40598520 - 40598283
Alignment:
| Q |
3 |
tcctcacccttcacccttaaacaccgttctacaataagagcaacctcctttagttgctcaatatcagcattatctatacttttgtccaaaatatgaagta |
102 |
Q |
| |
|
||||||| ||||||||||||||||| |||| |||| || ||||| |||||||| || ||||||| | ||||||| ||||||| | ||||||||||| |
|
|
| T |
40598520 |
tcctcactcttcacccttaaacacctttctgcaattagggcaacttcctttagatgttcaatatttttctcatctatatttttgtctagaatatgaagta |
40598421 |
T |
|
| Q |
103 |
accgaccctctttcattgaagaaaccaagtatgcggcaaggtttctatcaacctctggcctgcccaaagatagcgccttctttcctgtcagtagctctgc |
202 |
Q |
| |
|
| || ||||||| || |||| || ||||| |||||||||||||| |||||||||||||| ||||||| ||||| | |||||| ||||||||||| |
|
|
| T |
40598420 |
attgatcctctttaatccaagacacaaagtacattgcaaggtttctatctacctctggcctgccaaaagataatgccttttctcctgttagtagctctgc |
40598321 |
T |
|
| Q |
203 |
taggaccaccccaaaactataaacatcactcttctctg |
240 |
Q |
| |
|
|||||| || || || ||||| || ||||||||||||| |
|
|
| T |
40598320 |
taggacaactccgaagctatagacgtcactcttctctg |
40598283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 238
Target Start/End: Complemental strand, 40591918 - 40591683
Alignment:
| Q |
3 |
tcctcacccttcacccttaaacaccgttctacaataagagcaacctcctttagttgctcaatatcagcattatctatacttttgtccaaaatatgaagta |
102 |
Q |
| |
|
||||||| |||||||||||||||| |||| |||| || ||||| |||||||| ||||||| || | ||| || | |||||| |||||||| || |
|
|
| T |
40591918 |
tcctcactgttcacccttaaacacctttctgcaattagggcaacttcctttagatgctcaacatttcccgcatcgatgttgctgtccagaatatgaacta |
40591819 |
T |
|
| Q |
103 |
accgaccctctttcattgaagaaaccaagtatgcggcaaggtttctatcaacctctggcctgcccaaagatagcgccttctttcctgtcagtagctctgc |
202 |
Q |
| |
|
||||| | ||||||||||||||||| ||||| |||||| |||| || ||| |||| |||| || |||| || ||||||||||||||||||||||| |
|
|
| T |
40591818 |
accgatcttctttcattgaagaaacaaagtacatcgcaaggcttctttctaccactggtctgctataacatagtgctttctttcctgtcagtagctctgc |
40591719 |
T |
|
| Q |
203 |
taggaccaccccaaaactataaacatcactcttctc |
238 |
Q |
| |
|
|||||| |||||||| || || |||||||||||||| |
|
|
| T |
40591718 |
taggacaaccccaaagctgtagacatcactcttctc |
40591683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 85 - 238
Target Start/End: Complemental strand, 40602486 - 40602333
Alignment:
| Q |
85 |
tgtccaaaatatgaagtaaccgaccctctttcattgaagaaaccaagtatgcggcaaggtttctatcaacctctggcctgcccaaagatagcgccttctt |
184 |
Q |
| |
|
|||||| ||||||||| ||| || | ||||||||||||||||| || | |||||| |||| || || |||||||||| ||| |||| || ||||| |
|
|
| T |
40602486 |
tgtccagaatatgaagcaactgatcttctttcattgaagaaacaaaatgcattgcaaggcttctttctacatctggcctgctaaaacatagtgctttctt |
40602387 |
T |
|
| Q |
185 |
tcctgtcagtagctctgctaggaccaccccaaaactataaacatcactcttctc |
238 |
Q |
| |
|
|||||||| |||||||||||| || |||||||| |||||||||||||||||||| |
|
|
| T |
40602386 |
tcctgtcaatagctctgctagaacaaccccaaagctataaacatcactcttctc |
40602333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 3 - 240
Target Start/End: Original strand, 2014724 - 2014961
Alignment:
| Q |
3 |
tcctcacccttcacccttaaacaccgttctacaataagagcaacctcctttagttgctcaatatcagcattatctatacttttgtccaaaatatgaagta |
102 |
Q |
| |
|
|||||||||||||||| |||||||| |||| ||||||| ||||||||||||||||||||||| | || | || ||| ||||||||||||||||||||| |
|
|
| T |
2014724 |
tcctcacccttcacccgtaaacacctttctgcaataagggcaacctcctttagttgctcaatgttcgcctcgtcaatatttttgtccaaaatatgaagta |
2014823 |
T |
|
| Q |
103 |
accgaccctctttcattgaagaaaccaagtatgcggcaaggtttctatcaacctctggcctgcccaaagatagcgccttctttcctgtcagtagctctgc |
202 |
Q |
| |
|
|| |||| ||||||||||||||||| ||||| |||||||||||||| | ||||||||||| |||||||| ||||||||||||| |||||||||||| |
|
|
| T |
2014824 |
actgaccatctttcattgaagaaacaaagtacaatgcaaggtttctatccaactctggcctgctaaaagatagtgccttctttcctgccagtagctctgc |
2014923 |
T |
|
| Q |
203 |
taggaccaccccaaaactataaacatcactcttctctg |
240 |
Q |
| |
|
||| || || ||||| ||||| || ||||||||||||| |
|
|
| T |
2014924 |
tagtacaactccaaagctatagacgtcactcttctctg |
2014961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 240
Target Start/End: Original strand, 14029473 - 14029600
Alignment:
| Q |
113 |
tttcattgaagaaaccaagtatgcggcaaggtttctatcaacctctggcctgcccaaagatagcgccttctttcctgtcagtagctctgctaggaccacc |
212 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| || ||| ||| ||| | |||||| | | || |||| ||| ||||||||||||||||| ||| |
|
|
| T |
14029473 |
tttcattgaagaaacaaagtacattgcaaggtttctttctaccactgacctacaaaaagatggtgttttatttcgtgtgagtagctctgctaggacaacc |
14029572 |
T |
|
| Q |
213 |
ccaaaactataaacatcactcttctctg |
240 |
Q |
| |
|
||||||||||| ||||||| |||||||| |
|
|
| T |
14029573 |
ccaaaactatagacatcacccttctctg |
14029600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University