View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8576_low_2 (Length: 682)
Name: NF8576_low_2
Description: NF8576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8576_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 570; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 1 - 667
Target Start/End: Original strand, 2687186 - 2687852
Alignment:
| Q |
1 |
atatatggtcatgcaggtatgacaccagcttataagcttttggagatgtacaacaagaagtggggaaacaacattgatcctgtgtttagagagtgttgct |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2687186 |
atatatggtcatgcaggtatgacaccagctgataagcttttggagatgtacaacaagaagtggggaagcaacattgatcctgtgtttagagagtgttgct |
2687285 |
T |
|
| Q |
101 |
actgagctgaattcgttttaagatggagaatcggagatagctttatatgtgtttgtttattaataatttttggaatctttcaactttcaagccctatgtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2687286 |
actgagctgaattcgttttaagatggagaatcggagatagctttatatgtgtttgtttattaataatttttggaatctttcaactttcaagccctatgtg |
2687385 |
T |
|
| Q |
201 |
taccatcgattataaaatcttgatatgtgcataagtcctatcttaattgacaaaaatgttaagttgattgaaatttaaactacaacttttttatttgtgt |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2687386 |
taccatcgattataaaatcttgatatgtgtataagtcctatcttaattgacaaaaatgttaaattgattgaaatttaaactacaacttttttatttgtgt |
2687485 |
T |
|
| Q |
301 |
atgtgaattttcaatgactattgtcattttgtctatatagtagttagttgttagattaannnnnnnnnnnngtttaaatttaaatcatgacttccaactc |
400 |
Q |
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| T |
2687486 |
atgtgaattttcaatgactattatcattttgtctatatagtagttagttgttagattaatttttcttttttgtttaaatttaaatcatgacttccaactc |
2687585 |
T |
|
| Q |
401 |
tttatctcttaactcaaactagttcaattgtcatcaactctcttcatcttcttaattttaatcagtcacttttagtataacttggtctccannnnnnnaa |
500 |
Q |
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| T |
2687586 |
tttatctcttaactcaaactagtttaattgtcatcaactctcttcatcttcttaattttaatcagtcacttttagtataacttggtctccatttttttaa |
2687685 |
T |
|
| Q |
501 |
ccaacttagcctaccagttttcaattgcagtgaaagtaacccattagatttacaagaatttatcttttcttttgaaacggcaaaatttattaagaccgaa |
600 |
Q |
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| T |
2687686 |
ccaacttagcctaccaattttcaattgcagtgaaagtaacccattagatttacaagaatttatcttttcttttgaaacggcaaaatttattaagaccgaa |
2687785 |
T |
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| Q |
601 |
actcttgcaagacgcaaagagatggaaaagaaagcaatacaaagatgccgtatataggcgtaacatc |
667 |
Q |
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| T |
2687786 |
actcttacaagacgcaaagagacggaaaaaaaagcaatacaaagatgccgtatataggcgtaacatc |
2687852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 2694217 - 2694308
Alignment:
| Q |
14 |
caggtatgacaccagcttataagcttttggagatgtacaacaagaagtggggaaacaacattgatcctgtgtttagagagtgttgctactga |
105 |
Q |
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| T |
2694217 |
caggtatgacaccggctgaaaagcttttggagatgtacaataacaagtggggaagcaacatagattctgtgtttagagagtgttgctactga |
2694308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 570 - 667
Target Start/End: Original strand, 19109461 - 19109554
Alignment:
| Q |
570 |
ttttgaaacggcaaaatttattaagaccgaaactcttgcaagacgcaaagagatggaaaagaaagcaatacaaagatgccgtatataggcgtaacatc |
667 |
Q |
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| T |
19109461 |
ttttgaaacggcaaatattattgaaaccgaaactctcgcaagacgcaaagaggcggagaaaa----aatacaaggatgccacatataggcgtaacatc |
19109554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 283 - 336
Target Start/End: Original strand, 37146268 - 37146321
Alignment:
| Q |
283 |
caacttttttatttgtgtatgtgaattttcaatgactattgtcattttgtctat |
336 |
Q |
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| T |
37146268 |
caactttttcacttatgtaagtgaattttcaattactattgtcattttgtctat |
37146321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 308 - 336
Target Start/End: Complemental strand, 10828541 - 10828513
Alignment:
| Q |
308 |
ttttcaatgactattgtcattttgtctat |
336 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
10828541 |
ttttcaatgactattgtcattttgtctat |
10828513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 570 - 621
Target Start/End: Complemental strand, 19535983 - 19535931
Alignment:
| Q |
570 |
ttttgaaacggcaaaatttattaagaccgaaactctt-gcaagacgcaaagag |
621 |
Q |
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||||||||||||||| ||||| | |||||||||||| ||||||||||||||| |
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| T |
19535983 |
ttttgaaacggcaaatattattgaaaccgaaactcttcgcaagacgcaaagag |
19535931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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