View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8576_low_3 (Length: 601)

Name: NF8576_low_3
Description: NF8576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8576_low_3
NF8576_low_3
[»] chr3 (3 HSPs)
chr3 (10-601)||(45382702-45383303)
chr3 (262-351)||(50084778-50084869)
chr3 (47-93)||(47362558-47362604)
[»] chr6 (12 HSPs)
chr6 (18-98)||(27661703-27661783)
chr6 (61-98)||(26650237-26650274)
chr6 (61-98)||(26756205-26756242)
chr6 (62-102)||(12627824-12627864)
chr6 (58-98)||(29449688-29449728)
chr6 (123-173)||(8148268-8148318)
chr6 (117-170)||(20809178-20809231)
chr6 (69-98)||(28783014-28783043)
chr6 (59-116)||(34057962-34058019)
chr6 (136-172)||(29670971-29671007)
chr6 (59-95)||(30537508-30537544)
chr6 (122-170)||(31811989-31812037)
[»] chr1 (5 HSPs)
chr1 (268-366)||(31686728-31686828)
chr1 (263-416)||(25101927-25102080)
chr1 (62-107)||(264615-264660)
chr1 (118-158)||(27835482-27835522)
chr1 (62-98)||(43609830-43609866)
[»] chr5 (7 HSPs)
chr5 (269-323)||(27803033-27803089)
chr5 (59-98)||(28136673-28136712)
chr5 (262-366)||(41978263-41978369)
chr5 (298-366)||(16265448-16265516)
chr5 (61-98)||(645342-645379)
chr5 (62-107)||(11601688-11601733)
chr5 (122-170)||(12478334-12478382)
[»] chr7 (4 HSPs)
chr7 (58-98)||(43160491-43160531)
chr7 (60-107)||(10893872-10893919)
chr7 (56-98)||(650524-650566)
chr7 (62-98)||(18750887-18750923)
[»] chr8 (7 HSPs)
chr8 (123-165)||(14229600-14229642)
chr8 (58-98)||(32691750-32691790)
chr8 (272-325)||(40688136-40688191)
chr8 (59-107)||(41686804-41686852)
chr8 (262-325)||(31344424-31344487)
chr8 (272-350)||(7620090-7620172)
chr8 (59-107)||(31681833-31681881)
[»] chr2 (2 HSPs)
chr2 (56-152)||(9956949-9957045)
chr2 (262-349)||(9151330-9151417)
[»] chr4 (4 HSPs)
chr4 (48-98)||(10164460-10164510)
chr4 (60-98)||(28890768-28890806)
chr4 (66-102)||(29388374-29388410)
chr4 (58-98)||(45615427-45615467)


Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 10 - 601
Target Start/End: Original strand, 45382702 - 45383303
Alignment:
Q  10 agagacatgaacaccggactccacactgacactcattcgtcaacatcagtagtaatttaagaaaataacatatttgaatgtaatcacatatgttggtgac 109  Q
    |||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45382702 agagacatgaacactggacttcacactgacattcattcgtcaacatcagtagtaatttaagaaaataacatatttgaatgtaatcacatatgtcggtgac 45382801  T
Q  110 a-----------gacacagacaaatgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaagttcattatttaccaattagtcacttcct 198  Q
    |           ||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||| |||||    
T  45382802 atgttggtgtcagacacagacaaatgtcggacaccggacatgccttcgatcagaagtat-tgtgctacaaagttcattatttaccaattagtcaattcct 45382900  T
Q  199 ttgctttctccacttctatgaaacttaattgtcatacagaattacggcttannnnnnnnnnnnctaaatttt-gtgttacttttacttgttaacaatgag 297  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||            ||||||||| |||||||||||||||||||||||||||    
T  45382901 ttgctttctccacttctatgaaactta-ttgtcatacagaattacggcttattttttatttttctaaatttttgtgttacttttacttgttaacaatgag 45382999  T
Q  298 aaaagactcttgaagtgaacaattgtgttgtactttcggaaacaatgaaaatgttaaatgagctattttttgtcatttcttgaaatgtgtcatccctagt 397  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45383000 aaaagactcttgaagtgaataattgtgttgtactttcggaaacaatgaaaatgttaaatgagctattttttgttatttcttgaaatgtgtcatccctagt 45383099  T
Q  398 tagcatttaatcttctctcaatcaaaatggctcatttgataaatgaaaatagaaaatgtgtttacgaagtaaatagacccttaaataacacatttgataa 497  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  45383100 tagcatttaatcttctctcaatcaaaatggctcatttgataaatgaaaatagaaaacgtgtttacgaagtaaatagacccttaaataacacatttgataa 45383199  T
Q  498 atatgttacaatagaagataagaaaagtaatttattttaatttcatgaaaagtaaaactgatttgaggtggactgagatggatggtcggttgatgaaacg 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45383200 atatgttacaatagaagataagaaaagtaatttattttaatttcatgaaaagtaaaactgatttgaggtggactgagatcgatggtcggttgatgaaacg 45383299  T
Q  598 caac 601  Q
    ||||    
T  45383300 caac 45383303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 351
Target Start/End: Original strand, 50084778 - 50084869
Alignment:
Q  262 ctaaattttgtgttacttttacttgttaacaatgagaaa--agactcttgaagtgaacaattgtgttgtactttcggaaacaatgaaaatgt 351  Q
    ||||| ||||| ||| |||||||||||||||| ||||||  |||||||||| |||||||||||  ||| | || | ||||||||||||||||    
T  50084778 ctaaaatttgtattaattttacttgttaacaaggagaaaggagactcttgatgtgaacaattgccttgaatttccagaaacaatgaaaatgt 50084869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 47362558 - 47362604
Alignment:
Q  47 cgtcaacatcagtagtaatttaagaaaataacatatttgaatgtaat 93  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||||    
T  47362558 cgtcaacatcagtaataatttaagaaaattacataattgaatgtaat 47362604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 27661703 - 27661783
Alignment:
Q  18 gaacaccggactccacactgacactcattcgtcaacatcagtagtaatttaagaaaataacatatttgaatgtaatcacat 98  Q
    |||||||| |||| ||||| ||||| ||||||||||||   ||||||||||||||||||| |||||| |||||||||||||    
T  27661703 gaacaccgaactcgacactaacactgattcgtcaacattgatagtaatttaagaaaataatatatttcaatgtaatcacat 27661783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 26650274 - 26650237
Alignment:
Q  61 gtaatttaagaaaataacatatttgaatgtaatcacat 98  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26650274 gtaatttaagaaaataacatatttgaatgtaatcacat 26650237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 26756242 - 26756205
Alignment:
Q  61 gtaatttaagaaaataacatatttgaatgtaatcacat 98  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26756242 gtaatttaagaaaataacatatttgaatgtaatcacat 26756205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 12627864 - 12627824
Alignment:
Q  62 taatttaagaaaataacatatttgaatgtaatcacatatgt 102  Q
    ||||||||||||||||||||||| |||||||||| ||||||    
T  12627864 taatttaagaaaataacatatttcaatgtaatcatatatgt 12627824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 29449688 - 29449728
Alignment:
Q  58 gtagtaatttaagaaaataacatatttgaatgtaatcacat 98  Q
    |||||||||| ||||||||||||| ||||||||||||||||    
T  29449688 gtagtaatttcagaaaataacataattgaatgtaatcacat 29449728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 8148318 - 8148268
Alignment:
Q  123 tgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaagttc 173  Q
    ||||||||||| ||||||||||| ||| |||||||| |||||||| |||||    
T  8148318 tgtcggacaccagacatgccttccatcggaaatgtcggtgctacatagttc 8148268  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 20809231 - 20809178
Alignment:
Q  117 gacaaatgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaag 170  Q
    |||| ||||||||||||||||||||||||||||  || ||||  ||||||||||    
T  20809231 gacacatgtcggacaccggacatgccttcgatccaaagtgtcgatgctacaaag 20809178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 98
Target Start/End: Complemental strand, 28783043 - 28783014
Alignment:
Q  69 agaaaataacatatttgaatgtaatcacat 98  Q
    ||||||||||||||||||||||||||||||    
T  28783043 agaaaataacatatttgaatgtaatcacat 28783014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 34057962 - 34058019
Alignment:
Q  59 tagtaatttaagaaaataacatatttgaatgtaatcacatatgttggtgacagacaca 116  Q
    ||||||| ||||||||| ||||| |||| ||||||||||| ||| |||| ||||||||    
T  34057962 tagtaatataagaaaatgacataattgactgtaatcacatgtgtcggtgtcagacaca 34058019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 29670971 - 29671007
Alignment:
Q  136 acatgccttcgatcagaaatgtctgtgctacaaagtt 172  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  29670971 acatgccttcgatcagaaatgtcggtggtacaaagtt 29671007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 30537508 - 30537544
Alignment:
Q  59 tagtaatttaagaaaataacatatttgaatgtaatca 95  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  30537508 tagtaatttaagaaaataacataattgaatgttatca 30537544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 31811989 - 31812037
Alignment:
Q  122 atgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaag 170  Q
    ||||||||||| ||||||||||| |||||||  |||| |||||||||||    
T  31811989 atgtcggacactggacatgcctttgatcagaggtgtcagtgctacaaag 31812037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 366
Target Start/End: Original strand, 31686728 - 31686828
Alignment:
Q  268 tttgtgttacttttacttgttaacaatgagaaa--agactcttgaagtgaacaattgtgttgtactttcggaaacaatgaaaatgttaaatgagctattt 365  Q
    ||||||||| |||||||||||||||| ||||||  ||||||||||||||||| ||||| ||| | || |  ||||||||||||||| ||| || ||||||    
T  31686728 tttgtgttagttttacttgttaacaaggagaaaagagactcttgaagtgaacgattgtcttgcatttcctaaaacaatgaaaatgtcaaaagaactattt 31686827  T
Q  366 t 366  Q
    |    
T  31686828 t 31686828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 416
Target Start/End: Original strand, 25101927 - 25102080
Alignment:
Q  263 taaattttgtgttacttttacttgttaacaatgagaaa-agactcttgaagtgaacaattgtgttgtactttcggaaacaatgaaaatgttaaatgagct 361  Q
    |||| ||||||| | |||||||| ||||||| |||||| ||||||||| || ||||| |||| ||||| ||  ||||| ||||||||||   ||||||||    
T  25101927 taaaatttgtgtaagttttacttcttaacaaggagaaagagactcttggagggaacatttgtcttgtatttctggaaataatgaaaatgcctaatgagct 25102026  T
Q  362 attttttgtcatttcttgaaatgtgtcatccctagttagcatttaatcttctctc 416  Q
    ||||||  |  |||| |||| ||  || ||||||| |||||||| ||||||||||    
T  25102027 atttttatttttttc-tgaagtgcatcgtccctagctagcattttatcttctctc 25102080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 264615 - 264660
Alignment:
Q  62 taatttaagaaaataacatatttgaatgtaatcacatatgttggtg 107  Q
    |||||||||||| ||||||| || ||||||||||||| ||||||||    
T  264615 taatttaagaaagtaacatacttaaatgtaatcacatgtgttggtg 264660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 27835482 - 27835522
Alignment:
Q  118 acaaatgtcggacaccggacatgccttcgatcagaaatgtc 158  Q
    |||||||||||||||| ||||||||||| ||||||| ||||    
T  27835482 acaaatgtcggacaccagacatgccttcaatcagaagtgtc 27835522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 43609866 - 43609830
Alignment:
Q  62 taatttaagaaaataacatatttgaatgtaatcacat 98  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  43609866 taatttgagaaaataacataattgaatgtaatcacat 43609830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 269 - 323
Target Start/End: Complemental strand, 27803089 - 27803033
Alignment:
Q  269 ttgtgttacttttacttgttaacaatgagaaa--agactcttgaagtgaacaattgt 323  Q
    |||||||| |||||||||||||||| ||||||  |||||||||||||||||||||||    
T  27803089 ttgtgttagttttacttgttaacaaggagaaaagagactcttgaagtgaacaattgt 27803033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 28136673 - 28136712
Alignment:
Q  59 tagtaatttaagaaaataacatatttgaatgtaatcacat 98  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  28136673 tagtaatttaagaaaataacatatttcaatgtaatcacat 28136712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 262 - 366
Target Start/End: Complemental strand, 41978369 - 41978263
Alignment:
Q  262 ctaaattttgtgttacttttacttgttaacaatgagaaaaga--ctcttgaagtgaacaattgtgttgtactttcggaaacaatgaaaatgttaaatgag 359  Q
    ||||| ||||||||  |||||||||||| |||  ||| ||||  ||||||||||||| |||||| ||| | || |||||||||||||||||| ||| ||     
T  41978369 ctaaaatttgtgttgtttttacttgttagcaagaagataagaggctcttgaagtgaagaattgttttgcatttccggaaacaatgaaaatgtcaaaagaa 41978270  T
Q  360 ctatttt 366  Q
    |||||||    
T  41978269 ctatttt 41978263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 366
Target Start/End: Complemental strand, 16265516 - 16265448
Alignment:
Q  298 aaaagactcttgaagtgaacaattgtgttgtactttcggaaacaatgaaaatgttaaatgagctatttt 366  Q
    ||||||||||||||||||||| |||| ||| | || | |||||||||||||||| |||  |||||||||    
T  16265516 aaaagactcttgaagtgaacatttgtcttgcatttccagaaacaatgaaaatgtcaaaatagctatttt 16265448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 645342 - 645379
Alignment:
Q  61 gtaatttaagaaaataacatatttgaatgtaatcacat 98  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  645342 gtaatttaagaaaatgacataattgaatgtaatcacat 645379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 11601688 - 11601733
Alignment:
Q  62 taatttaagaaaataacatatttgaatgtaatcacatatgttggtg 107  Q
    |||||||||||| |||  || |||||||||||||||||||||||||    
T  11601688 taatttaagaaactaaattaattgaatgtaatcacatatgttggtg 11601733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 12478334 - 12478382
Alignment:
Q  122 atgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaag 170  Q
    ||||| |||||| |||| |||||| |||||||||||| |||||||||||    
T  12478334 atgtcagacaccagacacgccttccatcagaaatgtcggtgctacaaag 12478382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 43160491 - 43160531
Alignment:
Q  58 gtagtaatttaagaaaataacatatttgaatgtaatcacat 98  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  43160491 gtagtaatttaagaaaataacataattgaatgtaatcacat 43160531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 60 - 107
Target Start/End: Complemental strand, 10893919 - 10893872
Alignment:
Q  60 agtaatttaagaaaataacatatttgaatgtaatcacatatgttggtg 107  Q
    |||||||||||||||| ||||| |||||||||||||||| ||||||||    
T  10893919 agtaatttaagaaaatgacataattgaatgtaatcacatgtgttggtg 10893872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 98
Target Start/End: Original strand, 650524 - 650566
Alignment:
Q  56 cagtagtaatttaagaaaataacatatttgaatgtaatcacat 98  Q
    |||||||||||||||||||| ||||| ||||||| ||||||||    
T  650524 cagtagtaatttaagaaaatgacataattgaatgcaatcacat 650566  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 18750887 - 18750923
Alignment:
Q  62 taatttaagaaaataacatatttgaatgtaatcacat 98  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  18750887 taatttaagaaaatgacataattgaatgtaatcacat 18750923  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 165
Target Start/End: Original strand, 14229600 - 14229642
Alignment:
Q  123 tgtcggacaccggacatgccttcgatcagaaatgtctgtgcta 165  Q
    ||||||||||||||||||||||||||||||| |||| ||||||    
T  14229600 tgtcggacaccggacatgccttcgatcagaagtgtcagtgcta 14229642  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 32691750 - 32691790
Alignment:
Q  58 gtagtaatttaagaaaataacatatttgaatgtaatcacat 98  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  32691750 gtagtaatttaagaaaatgacataattgaatgtaatcacat 32691790  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 40688136 - 40688191
Alignment:
Q  272 tgttacttttacttgttaacaatgagaaa--agactcttgaagtgaacaattgtgt 325  Q
    ||||| ||||||||| ||||||||||| |  |||||||||||||||||||||||||    
T  40688136 tgttaattttacttggtaacaatgagatactagactcttgaagtgaacaattgtgt 40688191  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 41686852 - 41686804
Alignment:
Q  59 tagtaatttaagaaaataacatatttgaatgtaatcacatatgttggtg 107  Q
    ||||||||||||||||||||||| |||| | ||||||||| ||||||||    
T  41686852 tagtaatttaagaaaataacatagttgagtctaatcacatgtgttggtg 41686804  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 325
Target Start/End: Complemental strand, 31344487 - 31344424
Alignment:
Q  262 ctaaattttgtgttacttttacttgttaacaatgagaaaagactcttgaagtgaacaattgtgt 325  Q
    ||||| ||||||||| ||||||||  | |||| |||| ||||||||||||||||||| ||||||    
T  31344487 ctaaagtttgtgttaattttacttcctgacaaagagataagactcttgaagtgaacacttgtgt 31344424  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 350
Target Start/End: Complemental strand, 7620172 - 7620090
Alignment:
Q  272 tgttacttttacttgttaacaatgagaaa----agactcttgaagtgaacaattgtgttgtactttcggaaacaatgaaaatg 350  Q
    ||||| |||||||||||||||| ||||||    ||||||||||||| ||||||||| ||| | ||||  ||| ||||||||||    
T  7620172 tgttagttttacttgttaacaaggagaaaagagagactcttgaagttaacaattgtcttgcattttcaaaaataatgaaaatg 7620090  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 31681881 - 31681833
Alignment:
Q  59 tagtaatttaagaaaataacatatttgaatgtaatcacatatgttggtg 107  Q
    ||||||||||||||||| ||||| ||||||| |||||||| ||| ||||    
T  31681881 tagtaatttaagaaaatgacataattgaatgaaatcacatgtgtcggtg 31681833  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 152
Target Start/End: Complemental strand, 9957045 - 9956949
Alignment:
Q  56 cagtagtaatttaagaaaataacatatttgaatgtaatcacatatgttggtgacagacacagacaaatgtcggacaccggacatgccttcgatcaga 152  Q
    ||||| |||||| | |||||||  |||||||| ||||| |||| |||  ||| | ||||| |||| ||||| ||||||||||||||||| |||||||    
T  9957045 cagtaataatttgacaaaataaattatttgaacgtaatgacatgtgtccgtgccggacaccgacacatgtcagacaccggacatgcctttgatcaga 9956949  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 9151417 - 9151330
Alignment:
Q  262 ctaaattttgtgttacttttacttgttaacaatgagaaaagactcttgaagtgaacaattgtgttgtactttcggaaacaatgaaaat 349  Q
    ||||| ||||||||| |  ||| || ||| || ||||||||||||||||||||||||||||| ||| | ||  |||||| ||||||||    
T  9151417 ctaaaatttgtgttattcctacatggtaataaagagaaaagactcttgaagtgaacaattgtcttgcatttctggaaacgatgaaaat 9151330  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 10164460 - 10164510
Alignment:
Q  48 gtcaacatcagtagtaatttaagaaaataacatatttgaatgtaatcacat 98  Q
    ||||||| | ||||||||||||||||||  |||| ||||||||||||||||    
T  10164460 gtcaacaccggtagtaatttaagaaaatggcataattgaatgtaatcacat 10164510  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 28890768 - 28890806
Alignment:
Q  60 agtaatttaagaaaataacatatttgaatgtaatcacat 98  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  28890768 agtaatttaagaaaataacataattgaatgcaatcacat 28890806  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 29388410 - 29388374
Alignment:
Q  66 ttaagaaaataacatatttgaatgtaatcacatatgt 102  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  29388410 ttaagaaaatgacataattgaatgtaatcacatatgt 29388374  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 45615467 - 45615427
Alignment:
Q  58 gtagtaatttaagaaaataacatatttgaatgtaatcacat 98  Q
    |||||||||||||||||| ||||| ||||| ||||||||||    
T  45615467 gtagtaatttaagaaaatgacataattgaacgtaatcacat 45615427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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