View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8576_low_4 (Length: 561)
Name: NF8576_low_4
Description: NF8576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8576_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 48 - 543
Target Start/End: Complemental strand, 52579078 - 52578598
Alignment:
| Q |
48 |
acatatagggggtgtgtctgatccggttcgtcttcgtcttcaatttcgctctctatgtttaactttttattatcctttttcatgacatggtcaatctcta |
147 |
Q |
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| T |
52579078 |
acatatagggggtgtgtctgatccggttcgtcttcgtcttcaatttcgctctctatgtttaactttttattatcctttttcatgacatggtcaatctcta |
52578979 |
T |
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| Q |
148 |
ttctctactgttctgcagacaaattcaagtttgattgagggtcgatggcagctcattttcactacaagacctggaacagcatcacccattcaggttgtta |
247 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52578978 |
ttctcttctgttctgcagacaaattcaagtttgattgagggtcgatggcagctcattttcaccacaagacctggaacagcatcacccattcaggttgtta |
52578879 |
T |
|
| Q |
248 |
ttattatgtcactgaaaagtaaatctctaatggaaagctgcatatactatttttctcatctataaatttagaaatatacttccaacttgataatacctat |
347 |
Q |
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| T |
52578878 |
ttattatgtcactgaaaagtaaatctctaatggaaagctgcatatactatgtttctcatctataaatttagaaatatacttccaacttgataatacctat |
52578779 |
T |
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| Q |
348 |
ctaacacaacaaggatcactcacctgttcaatagttcaacacatgcttaatcatcatatcatatgactctcaatatggtattctatattgctctttcaga |
447 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
52578778 |
ctaacacaacaaggatcactcacctgttcaatagttcaacacatgcttaatga---------------ctcaatatggtattctatattgctctttcaga |
52578694 |
T |
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| Q |
448 |
gaacgtttgttggggttgannnnnnnagtgtatttcaagaggtttatcttcaaacaaatgatccacgcgtaaccaatattgtgtcattttctgatg |
543 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52578693 |
gaacgtttgttggggttgatttttttagtgtatttcaagaggtttatcttcaaacaaatgatccacgcgtaaccaatattgtgtcattttctgatg |
52578598 |
T |
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