View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8576_low_5 (Length: 504)

Name: NF8576_low_5
Description: NF8576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8576_low_5
NF8576_low_5
[»] chr3 (6 HSPs)
chr3 (26-285)||(32615010-32615269)
chr3 (286-358)||(32615317-32615389)
chr3 (300-360)||(32614192-32614252)
chr3 (300-360)||(32559230-32559290)
chr3 (428-484)||(32559099-32559154)
chr3 (302-354)||(33552760-33552812)
[»] chr1 (2 HSPs)
chr1 (55-191)||(15620248-15620384)
chr1 (104-213)||(16007580-16007687)
[»] chr8 (1 HSPs)
chr8 (287-350)||(27338917-27338980)
[»] chr7 (1 HSPs)
chr7 (125-216)||(34018441-34018532)
[»] chr2 (1 HSPs)
chr2 (300-358)||(6842985-6843043)


Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 26 - 285
Target Start/End: Original strand, 32615010 - 32615269
Alignment:
Q  26 atttacacaccaataaacgccacgatgatggcaaagttagctgtggcaaatgatatcaaaacgtatacaagtgttgcaaaattctgatgaagaacaaaac 125  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  32615010 atttacacaccaataaacgccacgatgatggcaaagttagcagtggaaaatgatatcaaaatgtatacaagtgtcgcaaaattctgatgaagaacaaaac 32615109  T
Q  126 tgagatatctgaggaagaacgtcaagatcatgaaacacattttgacattattagaggaaaactagctgatatattgaacaaaactagcagtcgaaaatgc 225  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32615110 tgagatatctgaggaagaacgccaagatcatgaaacacattttgaccttattagaggaaaactagctgatatattgaacaaaactagcaatcgaaaatgc 32615209  T
Q  226 taagctaggttaatatgatgttttatgtcctatctaatcaaattatcaatgcatatattt 285  Q
    ||| |||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||    
T  32615210 taaactaggttaatgtgatgttttatgtcctatcaaatcaaattatcaatgcatagattt 32615269  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 286 - 358
Target Start/End: Original strand, 32615317 - 32615389
Alignment:
Q  286 tgagaagacaatcgagggagatgaagaaattggcagggagaagaacaagagaaaacaaatggatgaagaagat 358  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32615317 tgagaagacaatccagggagatgaagaaattggcagggagaagaacaagaaaaaacaaatggatgaagaagat 32615389  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 300 - 360
Target Start/End: Complemental strand, 32614252 - 32614192
Alignment:
Q  300 agggagatgaagaaattggcagggagaagaacaagagaaaacaaatggatgaagaagatct 360  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32614252 agggagatgaagaaattggtagggagaagaacaagagaaaacaaatggatgaagaagatct 32614192  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 300 - 360
Target Start/End: Complemental strand, 32559290 - 32559230
Alignment:
Q  300 agggagatgaagaaattggcagggagaagaacaagagaaaacaaatggatgaagaagatct 360  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||    
T  32559290 agggagatgaagaaattggtagggagaacaacaagagaaaacaaatggatgaagacgatct 32559230  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 428 - 484
Target Start/End: Complemental strand, 32559154 - 32559099
Alignment:
Q  428 gtccctaaaaaatagtcactttatcatctgtgaggccacgcaagccactaactccaa 484  Q
    ||||||||||||||||||||| ||||||||| |||||||| ||||||||||| ||||    
T  32559154 gtccctaaaaaatagtcactt-atcatctgtcaggccacgtaagccactaacgccaa 32559099  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 354
Target Start/End: Original strand, 33552760 - 33552812
Alignment:
Q  302 ggagatgaagaaattggcagggagaagaacaagagaaaacaaatggatgaaga 354  Q
    ||||||||||||||||| ||||||| ||||||||||||| | | |||||||||    
T  33552760 ggagatgaagaaattggtagggagatgaacaagagaaaatagagggatgaaga 33552812  T

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Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 55 - 191
Target Start/End: Complemental strand, 15620384 - 15620248
Alignment:
Q  55 ggcaaagttagctgtggcaaatgatatcaaaacgtatacaagtgttgcaaaattctgatgaagaacaaaactgagatatctgaggaagaacgtcaagatc 154  Q
    ||||||||||| ||   || ||||||| |||||  |||||||||| ||||||||||||||||||| ||| | ||||| |||||||||||||  |||||||    
T  15620384 ggcaaagttagttgacacagatgatatgaaaacacatacaagtgtcgcaaaattctgatgaagaaaaaatcggagatgtctgaggaagaacaccaagatc 15620285  T
Q  155 atgaaacacattttgacattattagaggaaaactagc 191  Q
    ||||||| |||| |||| |||||||| ||||||||||    
T  15620284 atgaaacgcattgtgacgttattagacgaaaactagc 15620248  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 104 - 213
Target Start/End: Original strand, 16007580 - 16007687
Alignment:
Q  104 aaattctgatgaagaacaaaactgagatatctgaggaagaacgtcaagatcatgaaacacattttgacattattagaggaaaactagctgatatattgaa 203  Q
    ||||||||| |||||||||| ||||||  ||  |||||||||  |||||||||||||| |||| | || ||| |||||| ||||||||||| || || ||    
T  16007580 aaattctgaggaagaacaaatctgagaagtcgaaggaagaacaccaagatcatgaaacgcattgt-acgttactagagg-aaactagctgaaatgttaaa 16007677  T
Q  204 caaaactagc 213  Q
    ||||||||||    
T  16007678 caaaactagc 16007687  T

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Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 287 - 350
Target Start/End: Original strand, 27338917 - 27338980
Alignment:
Q  287 gagaagacaatcgagggagatgaagaaattggcagggagaagaacaagagaaaacaaatggatg 350  Q
    |||||||||||| || |||||||||||||||   ||||||||||||||||||||||||||||||    
T  27338917 gagaagacaatctagagagatgaagaaattgatggggagaagaacaagagaaaacaaatggatg 27338980  T

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Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 125 - 216
Target Start/End: Original strand, 34018441 - 34018532
Alignment:
Q  125 ctgagatatctgaggaagaacgtcaagatcatgaaacacattttgacattattagaggaaaactagctgatatattgaacaaaactagcagt 216  Q
    ||||||| ||||||||||||||| ||||||||||||  |||| | || ||||||||||||||| ||||||||| |  || ||||||||||||    
T  34018441 ctgagatgtctgaggaagaacgttaagatcatgaaatgcattgtaactttattagaggaaaaccagctgatatgtcaaataaaactagcagt 34018532  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 300 - 358
Target Start/End: Complemental strand, 6843043 - 6842985
Alignment:
Q  300 agggagatgaagaaattggcagggagaagaacaagagaaaacaaatggatgaagaagat 358  Q
    ||||||||||||||||| ||||||||| ||||||||||||||| | |||||||||||||    
T  6843043 agggagatgaagaaattagcagggagatgaacaagagaaaacagagggatgaagaagat 6842985  T

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