View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8576_low_6 (Length: 462)
Name: NF8576_low_6
Description: NF8576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8576_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 28383972 - 28384383
Alignment:
| Q |
18 |
acttaaattaatacacatgtaaggggaagtaggccatgcactgaaagatcacttacttaatttagaggtaaaaataatggtaataaacaacaattttaaa |
117 |
Q |
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| T |
28383972 |
acttaaattaatacacatgtaaggggaagtaggccatgcactgaaagatcactt----aatttagaggtaaaaataatggtaataaccaacaattttaaa |
28384067 |
T |
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| Q |
118 |
ggttatgaatgactcatggttttttctttaaagaaaattactctaaaatgaaaaagtataagaaaagagcgtgagagtaggaggatttgatggaggtaaa |
217 |
Q |
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| T |
28384068 |
ggttatcaatgattcatgattttttctttaaagaaaattactctaaaatgaaaaagtataagaaaagagcgtaagagtaggaggatttgatggaggtaaa |
28384167 |
T |
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| Q |
218 |
atttatataaatgaaagttggctatggttaatatattttaaaatcaaaacaaaactgctcaccaggacacgttgcagatggattatagctaattgagatt |
317 |
Q |
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| T |
28384168 |
atttatacaaatgaaagttggctatggttaatattttttaaaatcaaaacaaaactgctcaccaggacacgttgcagatggattatagctaattgagatt |
28384267 |
T |
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| Q |
318 |
ttcggattgattgagttaaacaatacaagtcagaaccttgaaagattgtctagacaattgtaatatacaacaaaataaagtacaattctacatggggaat |
417 |
Q |
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| T |
28384268 |
ttcggattgattgagttaaacaatacaagtcagaaccttgaaagattgtctggacaattgtaatatacaacaaaataaagtacaattctacatggggaat |
28384367 |
T |
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| Q |
418 |
ttatgaatccaacaac |
433 |
Q |
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| T |
28384368 |
ttatgaatccaacaac |
28384383 |
T |
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