View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8576_low_8 (Length: 394)
Name: NF8576_low_8
Description: NF8576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8576_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 52578620 - 52578237
Alignment:
| Q |
1 |
caatattgtgtcattttctgatgccatcggtgagctcaaggttgaggtaatactaagtaacttcaattggagctatcataaatttaatacacacttctgt |
100 |
Q |
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| T |
52578620 |
caatattgtgtcattttctgatgccatcggtgagctcaaggttgaggtaatactaagtaacttcaattggagctatcataaatttaatacacacttctgt |
52578521 |
T |
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| Q |
101 |
gttaaattccacttcannnnnnnnnnn---aatactacgcgagacagactgaaactagtaaactttttagtttaagaggcttagtcaatatttgtgaaat |
197 |
Q |
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| T |
52578520 |
gttaaattctacttcattttttttttttttaatactgcgcgagacagactgaaactagtaaactttttagtttaagaggcttagtcaatatt-gtgaaat |
52578422 |
T |
|
| Q |
198 |
aaatcatgccacataaattcaaaggttggctatctcttcaaaaatttgttaaaagtattgttaaaaattacagctcatttaattgctatgtgcttctaaa |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52578421 |
aaatcatgccacataaattcaaaggttggctatctcttcaaaaatttgttaaaagtattgttaaaaattacagctcatttaattgctatgtgcttctaaa |
52578322 |
T |
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| Q |
298 |
gaatcaagagttaatataatatggatagcattctggctttcttcgtgtatttcaggatagttgaattcccgtttgtgtctgtgct |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
52578321 |
gaatcaagagttaatataatatggatagcattctggctttcttcgtgtatatcaggatagttgaattcccgtttgtgtttgtgct |
52578237 |
T |
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