View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8576_low_9 (Length: 389)
Name: NF8576_low_9
Description: NF8576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8576_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 371
Target Start/End: Complemental strand, 52578935 - 52578598
Alignment:
| Q |
19 |
gatggcagctcattttcactacaagacctggaacagcatcacccattcaggttgttattattatgtcactgaaaagtaaatctctaatggaaagctgcat |
118 |
Q |
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| T |
52578935 |
gatggcagctcattttcaccacaagacctggaacagcatcacccattcaggttgttattattatgtcactgaaaagtaaatctctaatggaaagctgcat |
52578836 |
T |
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| Q |
119 |
atactatttttctcatctataaatttagaaatatacttccaacttgataatacctatctaacacaacaaggatcactcacctgttcaatagttcaacaca |
218 |
Q |
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| T |
52578835 |
atactatgtttctcatctataaatttagaaatatacttccaacttgataatacctatctaacacaacaaggatcactcacctgttcaatagttcaacaca |
52578736 |
T |
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| Q |
219 |
tgcttaatcatcatatcatatgactctcaatatggtattctatattgctctttcagagaacgtttgttggggttgannnnnnnagtgtatttcaagaggt |
318 |
Q |
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| T |
52578735 |
tgcttaatga---------------ctcaatatggtattctatattgctctttcagagaacgtttgttggggttgatttttttagtgtatttcaagaggt |
52578651 |
T |
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| Q |
319 |
ttatcttcaaacaaatgatccacgcgtaaccaatattgtgtcattttctgatg |
371 |
Q |
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| T |
52578650 |
ttatcttcaaacaaatgatccacgcgtaaccaatattgtgtcattttctgatg |
52578598 |
T |
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