View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8577_high_1 (Length: 824)
Name: NF8577_high_1
Description: NF8577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8577_high_1 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 466; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 262 - 824
Target Start/End: Complemental strand, 48817201 - 48816634
Alignment:
| Q |
262 |
aagcagcactaggacaagcaattaaccttccacaataagaaatttcctataatcggaacgtaccacaaaatattcagaattctatcaccaacattttggg |
361 |
Q |
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| T |
48817201 |
aagcagcactaggacaagcaattaaccttccacaataagaaatttcctataatcggaacgtaccacaaaatattcagaattctatcaccaacattttggg |
48817102 |
T |
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| Q |
362 |
agttcaag---tgttaggcacgagtaaatatcttggtgtattgtccatggtgggacgaagtaaaaagacaacatttagcttcatcaaagacaaaatttgg |
458 |
Q |
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| T |
48817101 |
agttcaaggagtgttaggcacaagtaaataccttggtgtattgtccatggtgggacgaagtaaaaagacaacatttagcttcatcaaagacaaaatttgg |
48817002 |
T |
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| Q |
459 |
cataaaataaattcatggagcatcaaatgcttatataaggcaggaagagcggttattattaaatatgtacttcaggttattatgtcttatgtcatgagta |
558 |
Q |
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| T |
48817001 |
cataaaataaattcatggagcaacaagtgtttatacaaggcaggaagaacggttattattaaatatgtacttcaggttattatgtcttatgtcatgagta |
48816902 |
T |
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| Q |
559 |
ttctctttctgcccacaactcttattgacgtaactnnnnnnnggatgaatgtgttatggtggggacatagaggtgctataaataatggaatgtagtggct |
658 |
Q |
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| T |
48816901 |
ttctctttctacccacaactcttattgacgtaactaaaaaaatgatgaatgtgttatggtggggacatagaggtgctataaataatggaatgtagtggct |
48816802 |
T |
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| Q |
659 |
tttatgagaca--cttatggttcacaagaaccacgacagtatgggtttcaaagatcttatgactttcaatttagcgatgcttggtaaacaaggatggaaa |
756 |
Q |
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| T |
48816801 |
tttatgggacaagcttatggttcacaagaaccacgacagtatggatttcaaagatcttatgactttcaatttagcgatgcttggtaaacaatgatgaaaa |
48816702 |
T |
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| Q |
757 |
tttcaaacataaccaaatgttttagtttcaaggctctttaaagctcgttagttttcccgtagcacgtt |
824 |
Q |
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| T |
48816701 |
ttccaaacataaccaaatgttttagtttcaaggctctttaaagctcgttagttttcccgtagcacgtt |
48816634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 48817425 - 48817200
Alignment:
| Q |
12 |
gattattctagagagaggtttgaggcaaggcggtccattattaccttgtttttatttttatt------attaaatgtgcatatggccatttttctctcat |
105 |
Q |
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| T |
48817425 |
gattattctagggagaggtttgaggcaaggcggtccattattaccttgtttttatttttatttttattattaaatgtgcatatggccatttttctctcat |
48817326 |
T |
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| Q |
106 |
taatcgtacagaggtgaggggagggtggaattgcatgaaaccaagatatgcctggatgtacctattgttactcacttcttacagatggttgttttttctt |
205 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48817325 |
taaacgtacagaggtgaggggagggtggaattgcatgaaaccaagatatgcctggatgtacctattgttactcacttcttacagatggttgtcttttctt |
48817226 |
T |
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| Q |
206 |
cttcaaggttgacgatcatgaagcaa |
231 |
Q |
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| T |
48817225 |
cttcaaggttgacgatcatgaagcaa |
48817200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 730 - 763
Target Start/End: Complemental strand, 43990724 - 43990691
Alignment:
| Q |
730 |
gcgatgcttggtaaacaaggatggaaatttcaaa |
763 |
Q |
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| T |
43990724 |
gcgatgcttggtaaacagggatggaaatttcaaa |
43990691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 730 - 763
Target Start/End: Original strand, 20638282 - 20638315
Alignment:
| Q |
730 |
gcgatgcttggtaaacaaggatggaaatttcaaa |
763 |
Q |
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| T |
20638282 |
gcgatgcttggtaaacagggatggaaatttcaaa |
20638315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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